Glycosyltransferases are powerful tools for the synthesis of complex and biologically important carbohydrates. Wild-type glycosyltransferases may not have all the properties and functions that are desired for large-scale production of carbohydrates that exist in nature and those with non-natural modifications. With the increasing availability of crystal structures of glycosyltransferases, especially those in the presence of donor and acceptor analogs, crystal structure-guided rational design has been quite successful in obtaining mutants with desired functionalities. With current limited understanding of the structure-activity relationship of glycosyltransferases, directed evolution continues to be a useful approach for generating additional mutants with functionality that can be screened for in a high-throughput format. Mutating the amino acid residues constituting or close to the substrate binding sites of glycosyltransferases by structure-guided directed evolution further explores the biotechnological potential of glycosyltransferases that can only be realized through enzyme engineering. This mini-review discusses the progress made towards glycosyltransferase engineering and the lessons learned for future engineering efforts and assay development.