Type IIb heat-labile enterotoxin (LT-IIb) is produced by Escherichia coli 41. Restriction fragments of total cell DNA from strain 41 were cloned into a cosmid vector, and one cosmid clone that encoded LT-IIb was identified. The genes for LT-Ilb were subcloned into a variety of plasmids, expressed in minicells, sequenced, and compared with the structural genes for other members of the Vibrio cholerae-E. coli enterotoxin family. The A subunits of these toxins all have similar ADP-ribosyltransferase activity. The A genes of LT-IIa and LT-IIb exhibited 71% DNA sequence homology with each other and 55 to 57% homology with the A genes of cholera toxin (CT) and the type I enterotoxins of E. coli (LTh-I and LTp-I). The A subunits of the heat-labile enterotoxins also have limited homology with other ADP-ribosylating toxins, including pertussis toxin, diphtheria toxin, and Pseudomonas aeruginosa exotoxin A. The B subunits of LT-IIa and LT-IIb differ from each other and from type I enterotoxins in their carbohydrate-binding specificities. The B genes of LT-IIa and LT-IIb were 66% homologous, but neither had significant homology with the B genes of CT, LTh-I, and LTp-I. The A subunit genes for the type I and type II enterotoxins represent distinct branches of an evolutionary tree, and the divergence between the A subunit genes of LT-IIa and LT-IIb is greater than that between CT and LT-I. In contrast, it has not yet been possible to demonstrate an evolutionary relationship between the B subunits of type I and type II heat-labile enterotoxins. Hybridization studies with DNA from independently isolated LT-II-producing strains of E. coli also suggested that additional variants of LT-II exist.More than a decade ago, the heat-labile enterotoxins of Escherichia coli and Vibrio cholerae were recognized to be a family of related protein toxins with similarities in structure, mode of action, and immunochemistry (12,13 Recently, new heat-labile enterotoxins were discovered (17,19,21), and the V. cholerae-E. coli enterotoxin family was divided into two distinct antigenic groups (36). Cholera toxin (CT) (12) and the type I E. coli heat-labile enterotoxins (LT-I), including the antigenic variants LTh-I and LTp-I (22), belong to serotype I, and antiserum to any one of them will neutralize the other type I toxins. In contrast, type II E. coli enterotoxins (LT-II) are not neutralized by antisera against type I toxins, but they are neutralized by antiserum to the prototype 21,36). Two antigenic variants of type II enterotoxin, designated LT-IIa and LT-IIb, were characterized (19, 21). Both consist of A and B subunits which are similar in size to the subunits of CT and LT-I. The ADP-ribosyltransferase activity of these LT-II toxins is similar to that of CT and LT-I (8; P. P. Chang, S.-C. Tsai, R. Adamik, B. C. Kunz, J. Moss, E. M. Twiddy, and R. K. Holmes, submitted for publication), but the gangliosidebinding specificities of LT-IIa and LT-IIb are different from those of CT and LT-I and from each other (14,19,21 (20). The plasmids pBR322, p...