Abstract:This is a longitudinal single-arm clinical trial aimed to investigate whether exercise training would modify the whole-blood methylation profile in healthy women. A total of 45 subjects were engaged in an exercise training protocol during a 14-week follow-up, consisting of aerobic cardiorespiratory and muscle strength exercises. Subjects were evaluated at baseline (PRE), after 7 weeks of exercise training (POST 7), and after 14 weeks of exercise training (POST 14). Functional primary outcomes included anthropo… Show more
“…The extent of their involvement in adaptive gene regulation programs, particularly in physical exercise, has just been systematically explored. Notably, Rodrigues et al [12] identi ed C2H2-ZF motifs in a study related to training, mirroring the attention garnered by this TF family in our research. Collectively, our ndings contribute to a growing body of evidence emphasizing the potential signi cance of C2H2-ZF proteins in the molecular responses to physical exercise, and the therapeutic nature of this target should be investigated in further studies.…”
Section: Discussionsupporting
confidence: 83%
“…It is already known that physical exercise bene ts cardiovascular, metabolic, muscular, and skeletal health through several mechanisms [10], including epigenetics modi cations [11]. In this context, researchers have explored how physical exercise can modulate DNA methylation pro le in different populations, including elderly individuals [12] or healthy young individuals [13]. However, there is still a gap to be lled about exercise-induced epigenetic effects in obese women.…”
Background: It is known that obesity can be affected by genetic and epigenetic alterations, however little is known about the DNA methylation markers related to health promotion interventions aiming weigh loss. This study explored the effects of an 8-week integrated strength and aerobic training protocol on the DNA methylation patterns in obese women.
Methods: 13 women with a BMI of 33±2 kg/m², aged 34±5 years, underwent evaluation of body composition, waist circumference, physical performance (VO2max), and peripheral blood collection for DNA methylation analysis (EPIC Beadchip Illumina) before and after eight weeks of combined physical training intervention (3 times/week, 55 minutes/session, 70-90% of max HR).
Results: The intervention yielded noteworthy clinical enhancements, encompassing diminished waist circumference, fat mass, and increased VO2 max (p<0.05). In DNA methylation, we identified 16 Differentially Methylated Regions (DMRs) encompassing 103 CpG sites. Most of these regions were mainly located in promoters’ regions (TSS1500 and TSS200). Among the identified DMRs, 8 exhibited hypomethylation, while the remaining 8 showed hypermethylation after exercise protocol. Enrichment analysis unveiled pathways linked to cardiac, immune, and thermogenic functions.
Conclusion: Combined physical training can promote modifications in the DNA methylation profile at CpG sites in genes involved in energy metabolism pathways, increase physical performance, and reduce body fat and waist circumference. Regardless of weight loss, the exercise protocol may promote protection against cardiovascular diseases through epigenetic modifications.
Trial registration: ClinicalTrials.gov (NTC 03119350).
“…The extent of their involvement in adaptive gene regulation programs, particularly in physical exercise, has just been systematically explored. Notably, Rodrigues et al [12] identi ed C2H2-ZF motifs in a study related to training, mirroring the attention garnered by this TF family in our research. Collectively, our ndings contribute to a growing body of evidence emphasizing the potential signi cance of C2H2-ZF proteins in the molecular responses to physical exercise, and the therapeutic nature of this target should be investigated in further studies.…”
Section: Discussionsupporting
confidence: 83%
“…It is already known that physical exercise bene ts cardiovascular, metabolic, muscular, and skeletal health through several mechanisms [10], including epigenetics modi cations [11]. In this context, researchers have explored how physical exercise can modulate DNA methylation pro le in different populations, including elderly individuals [12] or healthy young individuals [13]. However, there is still a gap to be lled about exercise-induced epigenetic effects in obese women.…”
Background: It is known that obesity can be affected by genetic and epigenetic alterations, however little is known about the DNA methylation markers related to health promotion interventions aiming weigh loss. This study explored the effects of an 8-week integrated strength and aerobic training protocol on the DNA methylation patterns in obese women.
Methods: 13 women with a BMI of 33±2 kg/m², aged 34±5 years, underwent evaluation of body composition, waist circumference, physical performance (VO2max), and peripheral blood collection for DNA methylation analysis (EPIC Beadchip Illumina) before and after eight weeks of combined physical training intervention (3 times/week, 55 minutes/session, 70-90% of max HR).
Results: The intervention yielded noteworthy clinical enhancements, encompassing diminished waist circumference, fat mass, and increased VO2 max (p<0.05). In DNA methylation, we identified 16 Differentially Methylated Regions (DMRs) encompassing 103 CpG sites. Most of these regions were mainly located in promoters’ regions (TSS1500 and TSS200). Among the identified DMRs, 8 exhibited hypomethylation, while the remaining 8 showed hypermethylation after exercise protocol. Enrichment analysis unveiled pathways linked to cardiac, immune, and thermogenic functions.
Conclusion: Combined physical training can promote modifications in the DNA methylation profile at CpG sites in genes involved in energy metabolism pathways, increase physical performance, and reduce body fat and waist circumference. Regardless of weight loss, the exercise protocol may promote protection against cardiovascular diseases through epigenetic modifications.
Trial registration: ClinicalTrials.gov (NTC 03119350).
“…We should note that these rules are not zero-one rules, as there are well-known hypermethylated CpG islands in different tissues and diseases [16, 39, 37, 6]. There are also observations about flanking regions of CpG islands, called CpG island shores [24].…”
DNA methylation plays a crucial role in biological processes, including imprinting, development, inflammation, and several disorders, such as cancer. Bisulfite sequencing (BS) is the gold standard for single-base resolution in measuring DNA methylation. This process involves treating genomic DNA with sodium bisulfite, followed by polymerase chain reaction (PCR), converting unmethylated cytosines to thymines (C to T) and guanines to adenines (G to A). However, aligning reads obtained through next-generation sequencing (NGS) of the converted DNA is challenging due to the high number of mismatches caused by these conversions. \Various BS aligners aim to simplify BS read alignment to conventional DNA alignment by modifying the reference genome and/or reads. Methods include three-letter alignment and wild-card alignment, each with its limitations. \This work introduces a novel BS aligner, ARYANA-BS, which departs from conventional DNA aligners by considering base alterations in BS reads within its alignment engine. Leveraging well-established DNA methylation patterns in different genomic contexts, ARYANA-BS generates five indexes from the reference, aligns each read to all indexes, and selects the hit with the minimum penalty. To further enhance alignment accuracy, an optional EM step has been developed, incorporating methylation probability information in the decision-making process for the index with the minimum penalty for each read. The presented approach seeks to improve the accuracy of BS read alignment by accounting for the intricacies of DNA methylation patterns in diverse genomic contexts. Results: Our experimental results, based on both simulated and real data, demonstrate that ARYANA-BS achieves state-of-the-art accuracy while maintaining competitive speed and memory usage.
“…We used 8 exercises for strength training, including 3 for the lower limbs and 5 for the upper limbs. The training protocol included leg curls, leg presses 45°, leg extensions, triceps with a neutral grip, bicep curls with dumbbells, lat pulldowns on the high pulley, seated rows, and inclined bench press exercises [ 30 ].…”
Section: Methodsmentioning
confidence: 99%
“…The literature shows that combined exercise training presents significant clinical changes for adult women when NOS3 polymorphisms are not used as a comparison [ 8 , 30 , 31 ], but there remains a need to understand whether these clinical changes are in sync when we analyse DNA methylation when genetics can be a limiting factor for the best clinical response to physical exercise.…”
scite is a Brooklyn-based organization that helps researchers better discover and understand research articles through Smart Citations–citations that display the context of the citation and describe whether the article provides supporting or contrasting evidence. scite is used by students and researchers from around the world and is funded in part by the National Science Foundation and the National Institute on Drug Abuse of the National Institutes of Health.