The p16 INK4a (p16) tumor suppressor gene can be inactivated by promoter region hypermethylation in many tumor types including lung cancer, the leading cause of cancer-related deaths in the U.S. We have determined the timing of this event in an animal model of lung carcinogenesis and in human squamous cell carcinomas (SCCs). In the rat, 94% of adenocarcinomas induced by the tobacco specific carcinogen 4-methylnitrosamino-1-(3-pyridyl)-1-butanone were hypermethylated at the p16 gene promoter; most important, this methylation change was frequently detected in precursor lesions to the tumors: adenomas, and hyperplastic lesions. The timing for p16 methylation was recapitulated in human SCCs where the p16 gene was coordinately methylated in 75% of carcinoma in situ lesions adjacent to SCCs harboring this change. Moreover, the frequency of this event increased during disease progression from basal cell hyperplasia (17%) to squamous metaplasia (24%) to carcinoma in situ (50%) lesions. Methylation of p16 was associated with loss of expression in both tumors and precursor lesions indicating that both alleles were functionally inactivated. The potential of using assays for aberrant p16 methylation to identify disease and͞or risk was validated by detection of this change in sputum from three of seven patients with cancer and 5 of 26 cancer-free individuals at high risk. These studies show for the first time that an epigenetic alteration, aberrant methylation of the p16 gene, can be an early event in lung cancer and may constitute a new biomarker for early detection and monitoring of prevention trials.
The p16
INK4a(p16) tumor suppressor gene that maps to chromosome band 9p21, is inactivated in Ͼ70% of cell lines derived from all histologic types of human nonsmall cell lung cancers (NSCLCs) (1, 2) predominantly through homozygous deletion (1) or in association with aberrant promoter region hypermethylation (3). These inactivating events are conserved across species, with homozygous deletion and aberrant methylation accounting for loss of p16 expression in 40% and 45%, respectively, of cell lines derived from rat lung tumors (4). Moreover, the methylated phenotype seen in the rat cell lines showed an absolute correlation with the detection of methylation in primary tumors and the aberrant promoter region methylation was also detected in four of eight primary tumors from which the derived cell line had homozygous deletion of p16 (4). Thus, the methylation change may precede genetic instability within the CpG island of this gene.Several genetic abnormalities frequently present in human lung cancer have now been found throughout the respiratory tract of smokers (5-7). These include allelic loss, but not homozygous deletion, involving 9p21 in premalignant lesions from cancer and cancer-free patients (6, 7). This finding suggests that inactivation of the p16 gene by aberrant methylation could represent a critical step in the genesis of NSCLC by allowing the uncontrolled clonal expansion of some of these premalignant lesio...