“…Although in vitro DNA hybridization kinetics based on some sequences have led to a set of mature theories (Dirks and Pierce, 2003, 2004; Dirks et al, 2004, 2007; SantaLucia and Hicks, 2004; Zhang and Winfree, 2009; Zadeh et al, 2011; Zhang et al, 2012, 2018a; Wolfe and Pierce, 2015; Wolfe et al, 2017), a basic theory for quantifying miRNA in vivo is still lacking, which is restricted by technologies in other related fields, such as fluorescence reconstruction (Ntziachristos and Weissleder, 2001; Dirks and Pierce, 2003; Cong and Wang, 2005; Lasser et al, 2008; Zhang et al, 2015; Shibata et al, 2017), pharmacokinetics (Brownbill et al, 2018; Caro et al, 2018; Sharma et al, 2018), and others. To quantify miRNA in vivo , the in vitro reaction kinetics of SQ, FP, and the target miRNA must be accurately modeled mathematically.…”