ABSTRACTtics that target therapy-resistant cells, much effort has been invested in identifying novel proteins or pathways that are required for BCR-ABL-mediated transformation.11 An important example is the observation that certain SRC family kinases are critical signaling proteins in BCR-ABL1-positive B-ALL and advanced CML. [12][13][14][15] Indeed, the SRC family kinase LYN is over-expressed in ABL1 kinase inhibitor-resistant CML blast crisis and knockdown of LYN induces apoptosis in these cells.14 In addition, proteins interacting with BCR-ABL1 were recently identified, 16 which may allow the identification of therapeutically relevant critical interactors. In contrast, unbiased studies of the NUP214-ABL1 signaling network are lacking and critical signaling pathways and interactors that can be therapeutically targeted may previously have been missed.We fear that, as for BCR-ABL1, resistance to ABL1 inhibitors may develop readily in NUP214-ABL1-positive T-ALL. Although clinical experience with ABL1 inhibitors in NUP214-ABL1-positive T-ALL is limited, a recent report on a NUP214-ABL1-positive patient who had imatinib added to his therapeutic scheme did indeed show that the patient, after obtaining a rapid remission, had a fatal relapse. 17 In this study, we aimed to identify novel therapeutic targets in NUP214-ABL1-positive T-ALL by using two approaches. First, we investigated the therapeutic potential of SRC family kinases. In addition, we performed an unbiased mass spectrometry and short interfering (si)RNA-based screen to identify proteins that are critical for the survival and proliferation of NUP214-ABL1-positive T-ALL cells.
Methods
ConstructsHemagglutinin(HA)-tagged NUP155 and SMC4 cDNAs were synthesized (Genscript) and cloned into the XhoI and EcoRI restriction sites of pMSCV-puro (Clontech). NUP214-ABL1 and BCR-ABL1 constructs are described elsewhere.
7Cell culture ALL-SIL, K-562, KE-37, RPMI-8402, JURKAT, SUP-T1, RLD-1 and L-5178-Y cell lines (obtained from DSMZ) were cultured in RPMI-1640 medium with 20% fetal calf serum (FCS). NA10073 and NA10075 cell lines were established from mouse T-ALL leukemias induced in a NUP214-ABL1 bone marrow transplant assay 7 and were cultured in RPMI-1640 with 20% FCS. HEK293T cells (from DSMZ) were cultured in RPMI-1640 with 10% FCS. Transfections were performed using Turbofect reagent (Fermentas).
ImmunoblottingSamples were processed according to standard procedures using the following antibodies: anti-FYN (Fyn3), anti-LCK (3A5), anti-ABL1 (24-11) and anti-ERK2 (Santa Cruz Biotechnology); anti-NUP155 (ab73292) (Abcam); anti-phospho-SRC family (Tyr416), anti-phospho-ABL1 (Tyr245), anti-SMC4 (D14E2) and anti-MAD2L1 (D8A7) (Cell Signaling); anti-HA tag (12CA5) (Roche) and peroxidase-labeled anti-mouse/anti-rabbit antibodies (Amersham).
Short interfering RNA knockdownHuman T-ALL cell lines were electroporated on a Genepulser Xcell instrument (Biorad) with 400 nM siRNA. For mouse T-ALL cell lines, two electroporations were performed with a 24-h interval. Viable cell number...