Abstract. We present a characterization of the chemical composition of the atmosphere of the Brazilian Amazon rainforest based on trace gases measurements carried out during the South American Biomass Burning Analysis (SAMBBA) airborne experiment in September 2012. We analyzed the observations of primary biomass burning emission tracers, i.e., carbon monoxide (CO) and 20 nitrogen oxides (NOx), ozone (O3), isoprene, and its main oxidation products, methyl vinyl ketone (MVK), methacrolein (MACR), and hydroxyhydroperoxides (ISOPOOH). The focus of SAMBBA was primarily on biomass burning emissions, but there were due to cloud edge effects on photolysis rates, which have a major impact on OH production rates.