Evolution and phylogeny of old world deer

Pitra, Christian; Fickel, Joerns; Meijaard, Erik; Groves, Pamela

doi:10.1016/j.ympev.2004.07.013

Cited by 248 publications

(273 citation statements)

References 53 publications

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“…Although in the taxonomic scheme followed in this paper 529 (Groves and Grubb 1987), Hylaphus and Axis are placed together under the same genus (Axis), it is 530 not unlikely that these scores reflect a true phylogenetic difference. As already mentioned, more 531 recent molecular and morphological studies (Pitra et al 2004, Meijaard and have 532 argued that Hyelaphus may not be closely related to Axis and should perhaps be placed closer to the 533 subgenus Rusa. 534…”

Section: Linear Morphometric Analysis 399mentioning

confidence: 99%

“…It should however be noted, that at the time von Koenigswald 182 classified these specimens, the Bawean deer (now Axis (Hyelaphus) kuhlii), was considered a member 183 of the subgenus Rusa (von Koenigswald 1933). Moreover the taxonomic position of Hyelaphus is still 184 a matter of controversy and some recent molecular studies support a close relationship between this 185 subgenus and the Cervus (Rusa) timorensis/Cervus (Rusa) unicolor-clade (Pitra et al 2004). 186…”

Section: Introduction 20 21mentioning

confidence: 99%

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Exploration of the taxonomy of some Pleistocene Cervini (Mammalia, Artiodactyla, Cervidae) from Java and Sumatra (Indonesia): a geometric- and linear morphometric approach

Gruwier

Vos

Kovarovic

2015

Quaternary Science Reviews

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2015) 'Exploration of the taxonomy of some PleistoceneCervini (Mammalia, Artiodactyla, Cervidae) from Java and Sumatra (Indonesia) : a geometric-and linear morphometric approach.', Quaternary science reviews., 119 . pp. 35-53. Further information on publisher's website:http://dx.doi.org/10. 1016/j.quascirev.2015.04.012 Publisher's copyright statement: NOTICE: this is the author's version of a work that was accepted for publication in Quaternary Science Reviews. Changes resulting from the publishing process, such as peer review, editing, corrections, structural formatting, and other quality control mechanisms may not be re ected in this document. Changes may have been made to this work since it was submitted for publication. A de nitive version was subsequently published in Quaternary Science Reviews, 119, 1 July 2015, 10.1016/j.quascirev.2015.04.012. Additional information:Use policyThe full-text may be used and/or reproduced, and given to third parties in any format or medium, without prior permission or charge, for personal research or study, educational, or not-for-pro t purposes provided that:• a full bibliographic reference is made to the original source • a link is made to the metadata record in DRO • the full-text is not changed in any way The full-text must not be sold in any format or medium without the formal permission of the copyright holders.Please consult the full DRO policy for further details.

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Section: Linear Morphometric Analysis 399mentioning

confidence: 99%

Section: Introduction 20 21mentioning

confidence: 99%

Exploration of the taxonomy of some Pleistocene Cervini (Mammalia, Artiodactyla, Cervidae) from Java and Sumatra (Indonesia): a geometric- and linear morphometric approach

Gruwier

Vos

Kovarovic

2015

Quaternary Science Reviews

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“…The high-throughput approach for sequencing was useful for obtaining the whole mitochondrial genome of red deer, so this method could be used broadly among animal taxa. Based on our phylogenetic results using whole mitochondrial genomes, family Cervidae is divided into two subfamilies, Cervinae and Capreolinae, which are also called subfamilies Plesiometacarpalia and Telemetacarpalia [5,7,22,34,37]. The two subfamilies contain five tribes, and four of these, Cervini, Muntiacini, Odocoileinae, and Capreolini, are well determined by the phylogenetic trees of family Cervidae.…”

Section: Discussionmentioning

confidence: 90%

“…The placement of two isolates of Przewalskium albirostris also suggest species misidentification as they lay on different branches. The placement as the sister species to a C. nippon and C. elaphus clade seems the appropriate one as suggested by [22]. The other isolate may be attributed to a misidentified specimen of Rusa spp.…”

Section: Acta Biologica Hungarica 67 2016mentioning

confidence: 83%

“…The divergence times (less than 0.01 mya) suggest that Cervus elaphus songaricus, Cervus elaphus alxaicus, Cervus elaphus xanthopygus are more closely related to Cervus nippon than to other Cervus elaphus subspecies. The close relationship of these two groups, as described previously, could be the result of the evolution of the genus Cervus in Asia [5,7,9,15,22,35,36], or maybe it could be attributed to anthropogenic influences as seen in European deer [18, 20, 28-29, 33, 36].…”

Section: Acta Biologica Hungarica 67 2016mentioning

confidence: 84%

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Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Frank¹,

Barta²,

Bana³

et al. 2016

Acta Biologica Hungarica

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Recently, there has been considerable interest in genetic differentiation in the Cervidae family. A common tool used to determine genetic variation in different species, breeds and populations is mitochondrial DNA analysis, which can be used to estimate phylogenetic relationships among animal taxa and for molecular phylogenetic evolution analysis. With the development of sequencing technology, more and more mitochondrial sequences have been made available in public databases, including whole mitochondrial DNA sequences. These data have been used for phylogenetic analysis of animal species, and for studies of evolutionary processes.We determined the complete mitochondrial genome of a Central European red deer, Cervus elaphus hippelaphus, from Hungary by a next generation sequencing technology. The mitochondrial genome is 16 354 bp in length and contains 13 protein-coding genes, two rRNA genes, 22 tRNA genes and a control region, all of which are arranged similar as in other vertebrates. We made phylogenetic analyses with the new sequence and 76 available mitochondrial sequences of Cervidae, using Bos taurus mitochondrial sequence as outgroup. We used 'neighbor joining' and 'maximum likelihood' methods on whole mitochondrial genome sequences; the consensus phylogenetic trees supported monophyly of the family Cervidae; it was divided into two subfamilies, Cervinae and Capreolinae, and five tribes, Cervini, Muntiacini, Alceini, Odocoileini, and Capreolini. The evolutionary structure of the family Cervidae can be reconstructed by phylogenetic analysis based on whole mitochondrial genomes; which method could be used broadly in phylogenetic evolutionary analysis of animal taxa.

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Java

2021

Evolution of Island Mammals

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Evolution and phylogeny of old world deer

Cited by 248 publications

References 53 publications

Exploration of the taxonomy of some Pleistocene Cervini (Mammalia, Artiodactyla, Cervidae) from Java and Sumatra (Indonesia): a geometric- and linear morphometric approach

Exploration of the taxonomy of some Pleistocene Cervini (Mammalia, Artiodactyla, Cervidae) from Java and Sumatra (Indonesia): a geometric- and linear morphometric approach

Complete mitochondrial genome sequence of a Hungarian red deer (Cervus elaphus hippelaphus) from high-throughput sequencing data and its phylogenetic position within the family Cervidae

Java

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