Eighteen reference strains of Chlamydia trachomatis were differentiated by omp1 PCR-and nested PCR-based RFLP analysis, using two restriction digestions, one with AluI and the other with the three enzymes HpaII, EcoRI and HinfI. AluI digestion allowed the differentiation of 12 different profiles after CT1/CT5 PCR and 13 different profiles after the nested PCR. The triple hydrolysis permitted the identification of 15 different patterns. In all, 16/18 reference strains were clearly identified. These reference patterns were successfully used to genotype 34 of 35 (28 strains and 7 clinical specimens) samples from infected students, collected during a screening programme in Yaounde (Cameroon). Genotypes D, Da, E, F, G and J were found. The most prevalent omp1 genotype was E (n ¼ 14; 40 %), followed by F (n ¼ 7; 20 %). As RFLP patterns of reference strains are essential for typing clinical isolates, they will greatly facilitate C. trachomatis characterization in many resource-limited laboratories.
IntroductionChlamydia trachomatis is the causative agent of a variety of diseases and syndromes, including trachoma, urogenital infections and lymphogranuloma venereum, depending on the biovar and serovar of the strains involved. Currently, 19 human serovars and numerous variants have been identified with the use of polyclonal and monoclonal antibodies against the major outer-membrane protein (MOMP). Serovars A-C are most often associated with trachoma and serovars L1-L3 are associated with lymphogranuloma venereum, while serovars D-K are primarily associated with urogenital and neonatarum infections (Morré et al., 1998a;Ossewaarde et al., 1994;Sturm-Ramirez et al., 2000). Various studies have shown the feasibility of typing clinical isolates by PCR-based RFLP analysis of the amplified omp1 gene encoding MOMP (Frost et al., 1991;Rodriguez et al., 1991;Sayada et al., 1991), avoiding the costly production of monoclonal antibodies. This method was originally performed on cell cultures of cervical and urethral specimens. Nowadays, the direct typing of cervical specimens by a nested omp1 PCR-RFLP assay is used for the differentiation of isolates into genotypes (Lan et al., 1993(Lan et al., , 1994. Nevertheless, typing of C. trachomatis is not routine in many African laboratories. Up to now, only one study showing the genotypic diversity of genital C. trachomatis in sub-Saharan Africa has been performed (SturmRamirez et al., 2000). Although RFLP analysis of an unknown strain consists of comparing the patterns with those of reference strains, patterns of all reference strains have not yet been published. Therefore, the aim of this study was to present RFLP patterns of 18/19 omp1-amplified reference strains, in order to promote typing of C. trachomatis by RFLP analysis in many laboratories with limited resources. In addition, this study was intended to describe the distribution of C. trachomatis genotypes in urogenital specimens, collected from Cameroonian students residing in Yaounde. omp1 amplification. Eighteen reference and 2...