SummaryAlkanes provide a particular analytical challenge to commonly used chemical ionisation methods such as proton-transfer from water owing to their basicity. It is demonstrated that the fluorocarbon ions CF3 + and CF2H + , generated from CF4, as reagents provide an effective means of detecting light n-alkanes in the range C2-C6 using direct chemical ionisation mass spectrometry. The present work assesses the applicability of the reagents in a Chemical Ionisation Mass Spectrometric (CI-TOF-MS) environments with factors such as high moisture content, operating pressures of 1-10 Torr, accelerating electric fields (E/N) and long-lived intermediate complex formation. Of the commonly used chemical ionisation reagents, H3O + and NO + only react with hexane and higher while O2 + reacts with all the target samples, but creates significant fragmentation. By contrast, CF3 + and CF2H + acting together were found to produce little or no fragmentation. In dry conditions with E/N = 100 Td or higher the relative intensity of CF2H + to CF3 + was mostly less than 1% but always less than 3%, making CF3 + the main reagent ion. Using O2 + in a parallel series of experiments, a substantially greater degree of fragmentation was observed. The detection sensitivities of the alkanes with CF3 + and CF2H + , while relatively low, were found to be better than those observed with O2 + . Experiments using alkane mixtures in the ppm range have shown the ionisation technique based on CF3 + and CF2H + to be particularly useful for measurements of alkane/air mixtures found in polluted environments. As a demonstration of the technique's effectiveness in complex mixtures, the detection of n-alkanes in smoker's breath is demonstrated