Wheat stripe rust is a fungal disease caused by Puccinia striiformis f. sp. tritici. The outbreak of wheat stripe rust will have a great impact on wheat production in Xinjiang, China. In order to identify the resistant to wheat stripe rust and the distribution of resistance genes in 82 wheat cultivars (41 spring wheat and 41 winter wheat), wheat seedling resistance was evaluated using CYR32, CYR33 and CYR34, and wheat adult plant stage resistance was identified using a combination of 3 races. 6 molecular markers were used to identify Yr29, Yr39, Yr46, Yr69 and YrTr1 in 82 wheat cultivars. The results showed that 3 of 82 wheat cultivars (Xinchun No.14, Xinchun No.22, and Xindong No.22) were immune to stripe rust at the adult plant stage. Xinchun No.29, Xinchun No.32, Xindong No.5 and Xindong No.29 were resistant at all stage. The highest detection rates were for Yr69 and YrTr1, at 78.05% and 76.83%. However, the detection rates for Yr39 and Yr46 were only 0 and 2.44%, respectively. The Xindong 22 were detected with the most resistance genes, which included 4 Yr genes. Furthermore, Xindong 22 were immune to the disease at adult plant stage. The results confirmed the resistance gene distribution of the wheat cultivars in Xinjiang were distributed heterogeneously, and the number of Yr genes was significantly and positively correlated with wheat cultivars resistant to stripe rust.