The transmission of pathogens by mosquito vectors predisposes several diseases leading to severe human mortality worldwide. The phenomenon of acquired resistance to insecticides or larvicides intensifies a thrust for discovery of novel alternatives for control of the diseases spread by these vectors. Present study demonstrates isolation of a couple of major N-alkylamides from A. ciliata and reveal larvicidal activity (LA) on larvae of Aedes aegypti and Culex quinquefasciatus that spread pathogens of dengue and filariasis respectively. The two compounds were identified to be 2E,4E-N-isobutyl undeca-2,4-diene-8,10-diynamide (NUD) and 2E,4E,8Z,10E-N-isobutyl dodeca-2,4,8,10-tetraenamide (NDT). The LC50 of NUD for late III – early IV instar larvae of Ae. aegypti was 44.19 ppm and 30.89 ppm respectively. The LC50 of NDT for the same were 18.28 ppm and 11.75 ppm respectively. NDT was found more toxic than NUD with both having a higher potency than methoprene (MET), the commercial larvicide. Quantitative structure-activity relationship (QSAR) study revealed that the chain length, degree of unsaturation and terminal methylation in the molecules influence the extent of LA. The compounds isolated in this study were further demonstrated for use as standards in analytical biochemistry. NUD and NDT content varied, in different parts of the plant, with both accumulating maximally at 19.01 mg/g and 68.55 mg/g, respectively in flowers. The LOD and LOQ for estimation of NUD by HPLC was 0.80 µg/ml and 2.51 µg/ml respectively, whereas, these were 5.50 µg/ml and 16.70 µg/ml, respectively, for NDT. To the best of our knowledge, this is the first report on the purification of larvicidal N-alkylamides from A. ciliata and demonstration of their use as biochemical standard.