2019
DOI: 10.1101/766444
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European maize genomes unveil pan-genomic dynamics of repeats and genes

Abstract: The exceptional diversity of maize (Zea mays)

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Cited by 7 publications
(8 citation statements)
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“…Molecular analyses discovered that traditional flint corn (Zea mays var. indurata) populations of Northern Europe have major contributions from North American flints, which were introduced to Europe during the sixteenth century [5,6]. Adaptations to the North and Central European climate included the development of a shorter growing cycle to avoid cold temperatures during the growth period and as another strategy, higher tolerance to cold temperatures [7].…”
Section: Introductionmentioning
confidence: 99%
“…Molecular analyses discovered that traditional flint corn (Zea mays var. indurata) populations of Northern Europe have major contributions from North American flints, which were introduced to Europe during the sixteenth century [5,6]. Adaptations to the North and Central European climate included the development of a shorter growing cycle to avoid cold temperatures during the growth period and as another strategy, higher tolerance to cold temperatures [7].…”
Section: Introductionmentioning
confidence: 99%
“…However, additional sites with small arrangements of knobs conserved in flint and dent lines were observed. This study also showed that the knob sequences could affect genes surrounded by them, decreasing their expression level (8).…”
Section: Genome Size Does Not Affect Maize Flowering Time Negative Values Formentioning
confidence: 59%
“…NGS-based genotyping has become a highly cost-effective and efficient agrigenomics tool in both model and non-model crop species including those with large and complex genomes (Cao et al 2011;Cheng et al 2019;Haberer et al 2019;Lachagari et al 2019). As NGS assembly algorithms and data types have improved, whole-genome sequencing (WGS) has been widely used for de novo assembly (Schatz et al 2014;Zapata et al 2016;Clavijo et al 2017;IWGSC 2018;Haberer et al 2019), as well as for re-sequencing, transcriptome sequencing (RNAseq) and epigenetic sequencing. When combined, these approaches allow experimental annotation of genes, their transcriptional variants and their transcriptional control (ENCODE Consortium 2012).…”
Section: Application Of Genomics To Mppsmentioning
confidence: 99%