Zedoary turmeric (Curcuma phaeocaulis), a cornerstone of traditional Chinese medicines in Guangxi Province, holds immense significance. Regrettably, the emergence of a novel leaf wilt in October 2017 has cast a pall over its production, leading to detrimental impacts on both yield and quality. By meticulous single-conidial isolation, this new pathogen was successfully extracted from ten diseased leaves. Subsequent confirmation of pathogenicity was achieved via the meticulous execution of Koch's postulates. In pursuit of accurate identification, morphological data were harmonized with a concatenated sequence analysis of the rDNA internal transcribed spacer (ITS), β-tubulin (TUB), and translation elongation factor 1 (TEF) regions. This rigorous approach unveiled the pathogen as an entirely novelNeopestalotiopsis species, warranting the nomenclature Neopestalotiopsis strain CP1. The optimum pH of conidial germination was between 5.0 and 5.5. Among the 665 different metabolites of the Neopestalotiopsis strain CP1, 60 carbon sources, 35 nitrogen sources, 4 phosphate sources, 8 sulfur sources, and 1 biometabolic pathway, effectively promoted the growth and development of conidia. The optimum pH of conidial germination was between 5.0 and 5.5. Among the 665 different metabolites of the Neopestalotiopsis strain CP1, 60 carbon sources, 35 nitrogen sources, 4 phosphate sources, 8 sulfur sources, and 1 biometabolic pathway, effectively promoted the growth and development of conidia. The ramifications of this pathogen's definitive identification and ongoing surveillance cannot be overstated, signifying a pivotal alert to zedoary turmeric cultivators in confronting this newfound peril.