We use computer simulations to study the kinetics and mechanism of proton passage through a narrow-pore carbon-nanotube membrane separating reservoirs of liquid water. Free energy and rate constant calculations show that protons move across the membrane diffusively in single-file chains of hydrogen-bonded water molecules. Proton passage through the membrane is opposed by a high barrier along the effective potential, reflecting the large electrostatic penalty for desolvation and reminiscent of charge exclusion in biological water channels. At neutral pH, we estimate a translocation rate of about 1 proton per hour and tube.Long-range proton transfer is central to processes as diverse as hydrogen fuel cells [1,2], the enzymatic function of many proteins, and in particular membrane biophysics [3]. To explore the fundamental question of watermediated proton transfer, and to design robust proton conducting media for technological applications, studying simpler model systems is essential. The quasi-onedimensional water chains forming inside carbon nanotubes [4] have attracted considerable attention, with computer simulations suggesting proton mobilities exceeding those even of bulk water [5,6,7,8,9,10]. However, large conductivity requires in addition a high density of charge carriers, which depends on the free energy penalty required to remove protons from the bulk liquid and introduce them into the pores. This then raises the question if water-filled nanotubes can actually carry protonic currents of high density, i.e., whether the electrostatic desolvation penalty of the proton is compensated, at least in part, by its exceptionally high mobility.Here, we will use computer simulations to explore the kinetics and mechanism of proton translocation through nanopores. In our simulations, four rigid (6,6) armchairtype carbon nanotubes of 144 carbon atoms each are packed into a hexagonal array to form a nanotube membrane in the periodically replicated simulation box (Fig. 1). The size of the simulation box in the z-direction parallel to the tube axes is 34.3Å, and 22.5Å and 19.5Å, respectively, in the x-and y-directions. The membrane is immersed in a bath of 292 water molecules containing one excess proton. At T = 300 K and a density corresponding to that of liquid water, the ∼8-Å diameter pores fill with single-file chains of six hydrogen bonded water molecules. In our simulations, the equations of motion are integrated with the velocity Verlet algorithm using a time step of 0.489 fs and a hydrogen mass of 2