Ensembl gets a Wellcome boost

Butler, Declan

doi:10.1038/35019198

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Cited by 6 publications

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“…ArrayCGHbase integrates DNA sample information, lab protocols, extracted data, and contains a plug-in architecture for data transformation, analysis, and graphical display, allowing users to develop their own modules. Reporters can be directly linked to the Ensembl [9] or UCSC [10] genome browsers, providing additional up-to-date information on each reporter. Reporters can also be manually imported into the MySQL database with the ability to update all linked experiments.…”

Section: Methodsmentioning

confidence: 99%

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays

et al. 2005

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Background: The availability of the human genome sequence as well as the large number of physically accessible oligonucleotides, cDNA, and BAC clones across the entire genome has triggered and accelerated the use of several platforms for analysis of DNA copy number changes, amongst others microarray comparative genomic hybridization (arrayCGH). One of the challenges inherent to this new technology is the management and analysis of large numbers of data points generated in each individual experiment.

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Section: Methodsmentioning

confidence: 99%