An in vitro model of supragingival plaque associated with gingivitis was characterized by traditional culture techniques, comparative 16S rRNA gene sequencing of isolates, and quantitative PCR (QPCR). Actinomyces naeslundii, Prevotella spp., and Porphyromonas gingivalis increased under conditions emulating gingivitis. Gram-negative species and total bacteria were dramatically underestimated by culture compared to the estimates obtained by QPCR.Inadequate oral hygiene leads to dental plaque accumulation around the gingival margin, resulting in inflammation of the gingiva. The environmental changes which occur as a result drive the ecological changes in the oral microbiota at this site, such as the ascendancy of Actinomyces spp. and gram-negative rods at the expense of Streptococcus spp. (19,20,26,31). With the advance of molecular techniques such as cloning and sequencing of the bacterial 16S rRNA gene, a greater proportion of species present in the oral cavity than the proportion that can be detected by traditional culture techniques has been detected, and the number of bacterial species present in the dental plaque is now estimated to be upwards of 630 (8). Quantitative PCR (QPCR) has the potential to account for the uncultivable portion of the oral microbial community as well as species which are more difficult to culture, such as Porphyromonas gingivalis (14,22), Aggregatibacter actinomycetemcomitans (formerly Actinobacillus actinomycetemcomitans) (3), and oral treponemes (2).Using the constant-depth film fermentor (CDFF) model for oral biofilms, we have previously demonstrated reproducible population shifts in the microbial community associated with gingivitis by altering the environmental conditions (4). The aim of this study was to identify the range of cultivable species present in this in vitro system and to monitor changes in specific species and genera as a response to changing environmental conditions by QPCR.Dental plaque biofilms associated with health and gingivitis were produced in the CDFF, removed aseptically at various time points, and analyzed by selective cultural analysis by using methods described previously (4). Total anaerobic counts were obtained on fastidious anaerobe agar (FAA; Bioconnections, Leeds, United Kingdom), Actinomyces spp. were selected for on cadmium fluoride acriflavine tellurite plates (CFAT) (32), Streptococcus spp. were selected for on mitis-salivarius agar (MS; BD Biosciences, Oxford, United Kingdom), and gramnegative species were selected for on Columbia blood agar with a supplement for gram-negative organisms (GN; Oxoid).The identification of cultivable species was carried out by comparative 16S rRNA gene sequencing. At various sampling time points, all the different colony morphotypes were subcultured on selective media (MS, CFAT, and GN) and 15 random isolates were subcultured from the nonselective media (FAA and Columbia blood agar) for identification. The primers used for 16S rRNA PCR are described in Table 1 and were used under the conditions described previousl...