Running titleNon-genetic heterogeneity in matrix-detached cells Keywords: AMP-activated protein kinase (AMPK), Extracellular signal-regulated kinase (ERK), Phosphoprotein enriched in astrocytes 15 kDa (PEA15), TFEB, Autophagy maturation, Anoikis.Financial support: This work was majorly supported by grants from the Wellcome Trust-DBT India Alliance (IA) Senior Research Fellowship (500112/Z/09/Z) to AR.
AbstractSome solid tumor cells escape death triggered by matrix-deprivation and cause cancer spread through metastatic growth. The role of phenotypic plasticity in this adaptation remains unknown. We recently identified a double-negative feedback loop between pAMPK (phospho-AMPK) and pAkt (phospho-Akt) that regulates the switch between attached and detached states of cancer cells. In this study, we show that matrix-detachment itself can give rise to two subpopulations with varying ERK signaling levels and autophagy flux. Cells with elevated ERK activity show autophagy maturation arrest leading to anoikis, whereas those with low ERK activity overcome this block and generate anchorage-independent colonies.Investigating upstream, we show a novel role of AMPK-mediated phosphorylation of PEA15 in inhibiting ERK activity by reducing the formation of MEK-ERK complex. Consequently, cells with higher AMPK activity have lower phospho-ERK, and this heterogeneity is reflected in vivo. Exploring downstream, we demonstrate that ERK inhibition leads to upregulation of TFEB, a major regulator of lysosome biogenesis and autophagy.Overexpression of TFEB not only rescues the defect in autophagy flux, but also re-inforces AMPK signaling, thus revealing a positive feedback loop between AMPK and TFEB.Mathematical modelling of this loop shows that it can give rise to two distinct cellular phenotypes -pAMPK high /TFEB high /pERK low and pAMPK low / TFEB low /pERK high -and phenotype switching, thus offering a mechanistic basis for our observations for non-genetic heterogeneity in anoikis adaptation. Significantly, we observed these heterogeneous cell states in patient-derived circulating tumor cells also. Thus, our work unravels a novel feedback loop that can generate non-genetic heterogeneity within matrix-detached cancer cells; targeting such loops may offer novel therapeutic approaches for restricting metastasis and improving therapeutic efficacy. was analysed on H&E stained slides of the tissue section. Images were taken using I X 71Olympus inverted microscope.
Microarray data analysisMDA-MB-231 cells were cultured for 24 hours in attached or matrix-deprived condition and MDA-MB-231 cells stably expressing shAMPKα2 cultured in suspension condition.Microarray assay was done after harvesting cells at indicated time points. RNA isolation was performed using RNeasy minikit (Cat No. 74104; Qiagen). Cy3 labelling was done by Agilent's Quick-Amp labeling Kit (Cat. No. 5190-0442) followed by hybridization on Agilent's In situ Hybridization Kit (Cat No.5188-5242). The comparison was done between expression of same genes across test sample and c...