TCK, the creatine kinase (ATP:creatine Nphosphotransferase) from sperm flagella of the sea urchin Strongylocentrotus purpuratus, is a Mr 145,000 axonemal protein that is employed in energy transport. Its amino acid sequence was obtained by analysis of fragments from cyanogen bromide digestion and by sequencing cDNA clones from two sea urchin testis libraries. TCK contains three complete but nonidentical creatine kinase segments joined by regions of sequence that are not creatine kinase-like and flanked by unique amino and carboxyl termini. Each creatine kinase segment is homologous to vertebrate creatine kinases of both muscle and brain types, and all three repeats contain the essential active-site cysteine. The sequence differences among repeats suggest an ancient gene triplication, around the time of the chordateechinoderm divergence. The echinoderm, with a unique creatine kinase in sperm, arginine kinase in eggs, and both phosphagen kinases in somatic cells, may represent a preserved branch point in evolution, and TCK may be a relic of this event.Structurally similar creatine kinases (CKs; EC 2.7.3.2) are found in many invertebrates and vertebrates (1), existing as dimers or octamers of subunit Mr -40,000 (2, 3). However, an echinoderm-specific CK is significantly larger: that purified from the flagellum of Strongylocentrotus purpuratus sperm is monomeric, with an estimated Mr of 145,000 (4). This CK participates in an energy shuttle that utilizes phosphocreatine to transfer the energy from ATP generated by the mitochondrion in the sperm head to dynein in the distal portions of the flagellum (5). A mitochondrial CK transphosphorylates creatine and ATP, maintaining the high levels of ADP that permit maximum respiration (5, 6). As phosphocreatine diffuses along the flagellum, the flagellar creatine kinase (TCK) regenerates ATP for use as a substrate by dynein. Specific inhibition of CKs by low levels of 1-fluoro-2,4, dinitrobenzene attenuates flagellar beating (6), indicating that the energy shuttle is essential for normal flagellar motion. TCK specifically associates with the axoneme and may bind directly to polymerized microtubules (7). To ascertain the primary structure of this unusually large CK, and to provide tools to examine its association with the axoneme, we have purified TCK, isolated and sequenced six CNBr peptides, and obtained the sequence of clones from two independent cDNA libraries.t MATERIALS AND METHODS S. purpuratus were obtained at low tide along the northern shore of the Olympic Peninsula in Washington. Restriction endonucleases were purchased from United States Biochemical and Boehringer Mannheim. All other reagents were ofthe highest grade available.Sperm were obtained and TCK was purified as described (4). TCK (46 mg) was dialyzed against 1.44 M Tris (pH 8.6) and S-carboxymethylated (8); the sample was then dialyzed against 70% formic acid and cleaved at methionine residues with CNBr (9). CNBr peptides were lyophilized, dissolved in 6 M guanidinium chloride buffered to pH 6.0...