Endophytic bacterial community of rice (Oryza sativa L.) from coastal saline zone of West Bengal: 16S rRNA gene based metagenomics approach

Kunda, Pranamita; Dhal, Paltu Kumar; Mukherjee, Abhishek

doi:10.1016/j.mgene.2018.08.004

Cited by 24 publications

(29 citation statements)

References 43 publications

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“…The Next-Generation Sequencing (NGS) technology is one of the most important techniques for microbiological research [13,[15][16][17][18]. It has contributed to the emergence of metagenomics, i.e., an analysis of the genome of microorganisms by only DNA extraction without the necessity of cultivating microorganisms on artificial media [16,18,19].…”

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

“…A list of the most recent metagenomic studies [11][12][13][14][15][16][17]23,24,[32][33][34][35][36][37][38][39][40] has been prepared to summarize endophyte strains that can be potentially employed for specific plants and properties that have been enhanced (Table 1). It was demonstrated that plant growth promoting (PGP) abilities and biological nitrogen fixation, followed by the production of secondary metabolites and bioactive compounds, synthesis of fungicides and bactericides, and protection against environmental stresses are the most important benefits that are provided to plants by endophytes (Table 1).…”

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

“…In turn, Annapurna et al [33] analyzed the genome of the KMS80 strain Bacillus paralicheniformis while using the NGS technique, which made it possible to understand the process of endophytic nitrogen fixation and the positive effect on plant growth and crop yields. Many studies recently published studies used NGS for the determination of the plant growth promoting properties of endophytes [13,16,17,32,33]. NGS evidenced that endophytic representatives of the following bacterial genera: Bacillus, Paenibacillus, Rhizobium, Duganella, Serratia, Klebsiella, Agrobacterium, Microbacterium, Sphingobacterium, Erwinia, Herbaspirillum, etc.…”

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

“…NGS evidenced that endophytic representatives of the following bacterial genera: Bacillus, Paenibacillus, Rhizobium, Duganella, Serratia, Klebsiella, Agrobacterium, Microbacterium, Sphingobacterium, Erwinia, Herbaspirillum, etc. were the most effective in plant growth promotion [13,17,23,33].…”

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

“…Several potential applications of endophytes can be found in the literature (Figure 1), which mainly include [3,[12][13][14]:…”

Section: Introductionmentioning

confidence: 99%

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Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions

2019

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Endophytic microbiota plays a role not only in supplying plants with the basic nutrients indispensable for their growth, but also helps them in the mechanisms of adaptation to various environmental stresses (i.e., salinity, drought), which is important in the aspect of crop yields. From the agricultural and biotechnological points of view, the knowledge of endophytes and their roles in increasing crop yields, plant resistance to diseases, and helping to survive environmental stress is extremely desirable. This paper reviews some of the beneficial plant–microbe interactions that might be potentially used in both agriculture (plant growth stimulation effect, adaptation of host organisms in salinity and drought conditions, and support of defense mechanisms in plants), and in biotechnology (bioactive metabolites, application of endophytes for bioremediation and biotransformation processes, and production of biofertilizers and biopreparations). Importantly, relatively recent reports on endophytes from the last 10 years are summarized in this paper.

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Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

Section: Next Generation Sequencing Platforms As An Effective Tool Inmentioning

confidence: 99%

“…Several potential applications of endophytes can be found in the literature (Figure 1), which mainly include [3,[12][13][14]:…”

Section: Introductionmentioning

confidence: 99%

See 3 more Smart Citations

Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions

2019

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Exploring Diversity of Bacterial Endophyte Communities Using Advanced Sequencing Technology

Tamošiūnė

Andriūnaitė

Stanys

et al. 2019

Microbiome in Plant Health and Disease

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Application of Metagenomics in Improvement of Rice

Pati¹,

Gouda

Rathore

2021

Bioinformatics in Rice Research

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Endophytic bacterial community of rice (Oryza sativa L.) from coastal saline zone of West Bengal: 16S rRNA gene based metagenomics approach

Cited by 24 publications

References 43 publications

Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions

Agricultural and Other Biotechnological Applications Resulting from Trophic Plant-Endophyte Interactions

Exploring Diversity of Bacterial Endophyte Communities Using Advanced Sequencing Technology

Application of Metagenomics in Improvement of Rice

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