The use of a sensitive and accurate parasite detection methodology is crucial in studies exploring prevalence of parasites in host populations or communities, and uncertainty in identifying parasite genera and/or lineages may limit the understanding of host-parasite interactions. Here, we used a multistate occupancy approach that accounts for imperfect detection to assess whether sex and breeding season influenced the prevalence of a specific Haemoproteus lineage (TARUF02) in a whitelined tanager population. Likewise, we explored whether the probability of detecting the target parasite in an infected bird using PCR and sequencing analyses may be influenced by season and host sex. We found little evidence that sex influenced the probability of an individual host being infected by a haemosporidian parasite. Conversely, we found that the probability of infection by Haemoproteus TARUF02 was ~30% higher during the breeding season, reflecting a higher prevalence of this parasite in this season. the probability that pcR detects DnA of haemosporidian parasite was higher for female birds, suggesting that they are more prone to be parasitized with parasitemia levels that are more successfully detected by molecular analysis. Sequencing successfully determined the Haemoproteus TARUF02 lineage in 60% of samples collected during the breeding season and 84% of samples collected during the non-breeding season. Understanding the ecology of hosts and aspects of their physiology that may influence the parasite infection is essential to better understanding of hemoparasite infections and how parasites influence their native hosts, through decreasing reproductive success, lifespan, and/ or survival. One of the most common parasites of wild birds are haemosporidians, vector-borne protozoans that infect several host species worldwide. Haemosporidians of the genera Haemoproteus are divided into two subgenera that differ in their vectors and vertebrate hosts. The subgenus H. (Haemoproteus) is transmitted by louse flies (Diptera: Hippoboscidae) and infects birds of the Order Columbiformes 1 as well as seabirds of the orders Suliformes 2-4 and Charadriiformes 4. The subgenus H. (Parahaemoproteus) is transmitted primarily by Culicoides biting midges (Diptera: Ceratopogonidae) 1 and infects birds of various orders and families 1. These parasites are closely connected to their hosts with impacts ranging from sublethal effects on the fitness of the host to the decline and extinction of populations 5-8. They can exert important selective pressure on the hosts through effects