2021
DOI: 10.1002/cpe.6305
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Enabling simulation of high‐dimensional micro‐macro biophysical models through hybrid CPU and multi‐GPU parallelism

Abstract: Micro‐macro models provide a powerful tool to study the relationship between microscale mechanisms and emergent macroscopic behavior. However, the detailed microscopic modeling requires tracking and evolving a potentially high‐dimensional configuration space at high computational cost. In this work, we present a novel parallel algorithm for simulating a high‐dimensional micro‐macro model of a gliding motility assay. We utilize a holistic approach aligning the data residency and simulation scales with the hybri… Show more

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