2019
DOI: 10.48550/arxiv.1908.04279
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Enabling Simulation of High-Dimensional Micro-Macro Biophysical Models through Hybrid CPU and Multi-GPU Parallelism

Abstract: Micro-macro models provide a powerful tool to study the relationship between microscale mechanisms and emergent macroscopic behavior. However, the detailed microscopic modeling may require tracking and evolving a high-dimensional configuration space at high computational cost. In this work, we present a parallel algorithm for simulation a high-dimensional micro-macro model of a gliding motility assay. We utilize a holistic approach aligning the data residency and simulation scales with the hybrid CPU and multi… Show more

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