The PA4203 gene encodes a LysR regulator and lies between the ppgL gene (PA4204), which encodes a periplasmic gluconolactonase, and, in the opposite orientation, the PA4202 (nmoA) gene, coding for a nitronate monooxygenase, and ddlA (PA4201), encoding a D-alanine alanine ligase. The intergenic regions between PA4203 and ppgL and between PA4203 and nmoA are very short (79 and 107 nucleotides, respectively). Here we show that PA4203 (nmoR) represses its own transcription and the expression of nmoA. A chromatin immunoprecipitation analysis showed the presence of a single NmoR binding site between nmoA and nmoR, which was confirmed by electrophoretic mobility shift assays (EMSAs) with the purified NmoR protein. Despite this observation, a transcriptome analysis revealed more genes to be affected in an nmoR mutant, including genes known to be part of the MexT LysR activator regulon. The PA1225 gene, encoding a quinone oxidoreductase, was the most highly upregulated gene in the nmoR deletion mutant, independently of MexT. Finally, deletion of the nmoA gene resulted in an increased sensitivity of the cells to 3-nitropropionic acid (3-NPA), confirming the role of the nitronate monooxygenase protein in the detoxification of nitronate.
Pseudomonas aeruginosa is a metabolically versatile Gram-negative bacterium that is also known as an important opportunistic pathogen (1). Because of its capacity to adapt to different lifestyles, it is not surprising that the genome of this bacterium contains a large proportion of genes coding for transcriptional regulators of different families, two-component regulatory systems, and alternative sigma factors (2-4). The most represented family of transcriptional regulators in P. aeruginosa is the so-called LysR family, as a search for "LysR" in the Pseudomonas Genome Database for strain PAO1 (http://www.pseudomonas.com) retrieved 121 regulators (5). The LysR-type transcriptional regulators (LTTRs) form a large and diverse family of regulators with a conserved N-terminal helix-turn-helix DNA binding domain and a variable C-terminal domain that are generally responsible for the binding of an activating ligand (6). One notable exception is the OxyR regulator, which is devoid of a ligand binding domain but orchestrates the response to oxidative stress via the oxidation of a couple of cysteine residues (7). LTTRs generally activate a single gene or operon, transcribed divergently, while negatively autoregulating their own transcription. However, this is not an absolute rule, and LTTRs may activate or repress distantly located genes and operons and have a more global role in regulation (6). This is the case for OxyR, which regulates several genes in Escherichia coli and has a surprisingly large regulon in P. aeruginosa (8)(9)(10). At physiological pH, 3-nitropropionate (3-NPA), a nitro toxin produced by plants and fungi (11,12), exists in equilibrium with its conjugate base, propionate-3-nitronate (P3N) (Fig. 1A).The P3N monooxygenase activity converts P3N to malonic semialdehyde, generating nit...