1H,15N-Heteronuclear Single Quantum
Coherence
(HSQC) NMR is a powerful technique that has been employed to characterize
small-molecule interactions with intrinsically disordered monomeric
α-Synuclein (aSyn). We report how solution pH can impact the
interpretation of aSyn HSQC NMR spectra and demonstrate that small-molecule
formulations (e.g., complexation with acidic salts) can lower sample
pH and confound interpretation of drug binding and concomitant protein
structural changes. Through stringent pH control, we confirm that
several previously identified compounds (EGCG, Baicalin, and Dopamine
(DOPA)) as well as a series of potent small-molecule inhibitors of
aSyn pathology (Demeclocycline, Ro90-7501, and (±)-Bay K 8644)
are capable of direct target engagement of aSyn. Previously, DOPA–aSyn
interactions have been shown to elicit a dramatic chemical shift perturbation
(CSP) localized to aSyn’s H50 at low DOPA concentrations then
expanding to aSyn’s acidic C-terminal residues at increasing
DOPA levels. Interestingly, this CSP profile mirrors our pH titration,
where a small reduction in pH affects H50 CSP, and large pH changes
induce robust C-terminal CSP. In contrast, under tightly controlled
pH 5.0, DOPA induces significant CSPs observed at both ionizable and
nonionizable residues. These results suggest that previous interpretations
of DOPA–aSyn interactions were conflated with pH-induced CSP,
highlighting the need for stringent pH control to minimize potential
false-positive interpretations of ligand interactions in HSQC NMR
experiments. Furthermore, DOPA’s preferential interaction with
aSyn under acidic pH represents a novel understanding of DOPA–aSyn
interactions that may provide insight into the potential gain of toxic
function of aSyn misfolding in α-synucleinopathies.