Background: Cyclocarya paliurus (C. paliurus) leaves contain multiple health benefical metabolites, and therefore are often used in functional foods and Chinese herbal medicines. However, breeding difficulties confines its utilization. Consequently, cell suspension culture was developed to produce the bioactive secondary metabolites of C. paliurus leaves, but the content was comparatively low. In the present paper, Aspergillus Niger Elicitor (ANE) was used to stimulate the synthesis of triterpenoids in the suspension cultured C. paliurus cells, and the signal molecules crosstalk involved in this elicitation was further studied to interpret the underlying mechanism. Results: Total triterpenoids accumulation of the cultured C. paliurus cells elicited by 200 µg/mL ANE was 9.17 times higher than that of the untreated cells. Nitric oxide (NO), hydrogen peroxide (H2O2) and jasmonic acid (JA) played important roles in the elicitation as signal molecules. Under the ANE stimulation, the concentrations of NO, H2O2 and JA all increased significantly, but presented different change profiles and peaked at different times. Based on series experiments of NO quenching by C-PTIO, H2O2 blocking by DMTU, and JA synthesis inhibition by IBU and NDGA, together with exogenous NO, H2O2 and JA addition experiments, it was deduced that ANE improved triterpenoids synthesis in the suspension cultured C. paliurus cells via a complex signal transduction network, in which three deduced and three hypothetical signal transduction pathways might be involved. JA was not only the junction of NO and H2O2 signal pathways, but also the critical point in the whole signal network. RNA-seq analysis showed that a total of 3 candidate JA synthesis pathway genes including 1 LOX and 2 OPR were found to be significantly up-regulated under the ANE stimulation, along with 5 down-regulated JAZs and 1 up-regulated JAR1 regulating to JA signal transduction.Conclusions: ANE can significantly increase the triterpenoids synthesis in the suspension cultured C. paliurus cells. RNA-seq analysis validated the pivotal role of JA in this ANE elicitation. Our results provided references for the further studies on triterpenoids synthesis in C. paliurus under ANE treatment.