Biological control of plant diseases generally requires release of living organisms into the environment. Cryphonectria hypoviruses function as biological control agents for the chestnut blight fungus, Cryphonectria parasitica, and hypovirus-infected C. parasitica strains can be used to treat infected trees. We used naturally occurring molecular marker polymorphisms to examine the persistence and dissemination of the three genomes of a hypovirus-infected C. parasitica strain, namely, the double-stranded RNA genome of Cryphonectria hypovirus 1 (CHV1) and the nuclear and mitochondrial genomes of its fungal host. The hypovirus-infected strain was experimentally introduced into a blight-infested chestnut coppice forest by treating 73 of 246 chestnut blight cankers. Two years after introduction, the hypovirus had disseminated to 36% of the untreated cankers and to 35% of the newly established cankers. Spread of the hypovirus was more frequent within treated sprout clusters than between sprout clusters. Mitochondrial DNA of the introduced fungus also was transferred into the resident C. parasitica population. Concomitant transfer of both the introduced hypovirus and mitochondrial DNA was detected in almost one-half of the treated cankers analyzed. The introduced mitochondrial DNA haplotype also was found in three resident isolates from newly established cankers. The nuclear genome of the introduced strain persisted in the treated cankers but did not spread beyond them.Hypovirulence in the chestnut blight fungus, Cryphonectria parasitica (Murr.) Barr, has been responsible for the natural recovery of many European chestnut (Castanea sativa Mill.) stands (reviewed in reference 25). Unlike the situation in Europe, hypovirulence has not become well established in North America except in isolated chestnut stands, and the American chestnut [Castanea dentata (Marsh.) Borkh.] has been reduced to an understory shrub in its natural range due to the disease (reviewed in references 2, 4, 19, 32, and 43).Hypovirulence of C. parasitica is caused by unencapsidated double-stranded RNA (dsRNA) viruses of the family Hypoviridae (13,17,18,26). These viruses are located in the cytoplasm of the fungus and can be transmitted from infected to uninfected C. parasitica strains via hyphal anastomosis (44). Horizontal transmission is restricted by a vegetative incompatibility system (vic) of the fungus involving at least six vic loci (14,15,30). The low diversity of vegetative compatibility (vc) types favors dissemination of the hypovirus and probably is a critical factor in the success of hypovirulence in Europe (7,11,16,34). Dissemination of the hypovirus within a fungal population can occur through infected asexual conidia or mycelial fragments but not through sexual ascospores (reviewed in reference 25).Hypovirulence is being exploited for the biological control of chestnut blight (5, 25, 41). Since the Cryphonectria hypovirus has no extracellular phase, it can be released into a population only by hypovirus-infected C. parasitica strains. T...