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AbstractWith the completion of the first phase 3 human gene therapy randomized clinical trial, in the form of voretigene neparvovec for RPE65-mediated inherited retinal dystrophy, as well as the advent of more than 10 other gene therapy trials for inherited retinal disorders, accurate genetic diagnostics will have an increasingly important role in clinical decisionmaking. Current genetic diagnostic testing panels primarily focus on coding sequences.However, we find that structural and intronic variations are crucial in solving ambiguous cases. We present four families in whom more in depth sequencing and bioinformatic analyses led to the identification of non-coding and structural variations in RPGRIP1 as the cause of disease. In the process we describe ten novel RPGRIP1 mutations. We suggest an expansion of both sequencing and bioinformatics tools in the diagnostics of inherited retinal degenerations to increase sensitivity and to make confident calls before enrolling patients in specific gene therapy clinical trials.