The healthy vaginal microbiota is generally dominated by lactobacilli that confer antimicrobial protection and play a crucial role in health. Bacterial vaginosis (BV) is the most prevalent lower genital tract infection in women in reproductive age and is characterized by a shift in the relative abundances of Lactobacillus spp. to a greater abundance of strictly anaerobic bacteria. In this study, we designed a new phylogenetic microarray-based tool (VaginArray) that includes 17 probe sets specific for the most representative bacterial groups of the human vaginal ecosystem. This tool was implemented using the ligase detection reaction-universal array (LDR-UA) approach. The entire probe set properly recognized the specific targets and showed an overall sensitivity of 6 to 12 ng per probe. The VaginArray was applied to assess the efficacy of rifaximin vaginal tablets for the treatment of BV, analyzing the vaginal bacterial communities of 22 BV-affected women treated with rifaximin vaginal tablets at a dosage of 25 mg/day for 5 days. Our results showed the ability of rifaximin to reduce the growth of various BV-related bacteria (Atopobium vaginae, Prevotella, Megasphaera, Mobiluncus, and Sneathia spp.), with the highest antibiotic susceptibility for A. vaginae and Sneathia spp. Moreover, we observed an increase of Lactobacillus crispatus levels in the subset of women who maintained remission after 1 month of therapy, opening new perspectives for the treatment of BV.
The human body harbors an enormous number of microorganisms that inhabit surfaces and cavities exposed or connected to the external environment (1). As one of these human-microbe habitats, the female genital tract is inhabited by bacterial communities that are known to confer antimicrobial protection to the vagina and play a crucial role in health (2, 3). The healthy vaginal microbiota is generally dominated by at least one Lactobacillus sp. among L. crispatus, L. iners, L. jensenii, and L. gasseri (4). Alterations in the types and relative proportions of the microbial species in the vagina can be associated with the development of infectious conditions, such as bacterial vaginosis (BV), aerobic vaginitis (AV), candidiasis (CA), and sexually transmitted infections (STI) (5, 6).BV is the most prevalent lower genital tract infection in women in reproductive age (7) and is associated with several adverse obstetrical and gynecological outcomes and increased risk for acquisition of HIV (8-10). BV is characterized by a shift in the relative abundances of Lactobacillus spp. to a greater abundance of strictly anaerobic bacteria, including Gardnerella vaginalis, Atopobium vaginae, Mycoplasma hominis, and species belonging to Prevotella, Mobiluncus, Megasphaera, Sneathia, and Eggerthella genera (6,[11][12][13]. BV is usually treated with antibiotics, including metronidazole and clindamycin (14); however, relapse rates are high and factors leading to relapse are poorly understood (15).Rifaximin, a broad-spectrum antibiotic with low systemic absorption, traditionally...