The inactivation of the mismatch repair (MMR) system of Pseudomonas aeruginosa modestly reduced in vitro fitness, attenuated virulence in murine models of acute systemic and respiratory infections, and decreased the initial oropharyngeal colonization potential. In contrast, the inactivation of the MMR system favored longterm persistence of oropharyngeal colonization in cystic fibrosis mice. These results may help in understanding the reasons for the low and high prevalences, respectively, of hypermutable P. aeruginosa strains in acute and chronic infections.The establishment of Pseudomonas aeruginosa chronic infections is mediated by a complex adaptive process that includes physiological changes produced by the activation of specific regulatory pathways, including the induction of the biofilm mode of growth or the differential expression of virulence genes (24), and the selection of an important number of adaptive mutations required for long-term persistence (20).A common feature of P. aeruginosa chronic lung infections, including those occurring in patients suffering from cystic fibrosis (CF), bronchiectasis, or chronic obstructive pulmonary disease, is a very high prevalence (30 to 60%) of hypermutable (or mutator) strains deficient in the DNA mismatch repair (MMR) system, in contrast to that observed in acute processes (Ͻ1%) (1,6,9,11,16,17). The presence of hypermutable strains has been found to be linked to the high antibioticresistance rates of P. aeruginosa clinical isolates recovered from patients with chronic lung infections (1,9,11,16), and in vitro and in vivo experiments have shown that hypermutation dramatically speeds up resistance development during exposure to antimicrobial agents (1, 12). Nevertheless, except for antimicrobial resistance development, a link between hypermutation and the genetic adaptation required for the longterm persistence of chronic infections has not yet been proved.Laboratory and theoretical approaches have shown that, under particular circumstances, such as exposure to new environments or stressful conditions, mutator cells are selected in bacterial populations by hitchhiking with the adaptive mutations that they produce more frequently than the regular cells, therefore playing a role in evolution (13,21,23). Various in vivo models have also shown that hypermutation may favor the adaptation and persistence of bacterial pathogens. Giraud et al. (4), using a murine model of Escherichia coli intestinal colonization, found that hypermutation was initially beneficial because it allowed a faster adaptation to the mouse gut environment, although this advantage disappeared once adaptation was reached and the transmissibility of the hypermutable strains was then considerably reduced due to the accumulation of deleterious mutations for secondary environments. A similar result was obtained by Nilsson et al. (15) when studying the adaptation of Salmonella enterica serovar Typhimurium to the reticuloendothelial system of mice. Finally, it has recently been shown that the inactivation...