oE, a secondary sigma factor of Bacillus subtilis, was found to increase 5-to 10-fold when cultures were shifted from 37 to 48°C. Western blot (immunoblot) analyses, in which monoclonal antibodies specific for the sigB operon products RsbV, RsbW, and crB were used to probe extracts from wild-type and mutant B. subtilis strains, revealed that all three proteins increased coordinately after heat shock and that this increase was dependent on &rB but not RsbV, a positive regulator normally essential for &3-dependent sigB expression.Nuclease protection experiments of RNA synthesized after heat shock supported the notion that the shift to 48°C enhanced transcription from the sigB operon's o'B-dependent promoter. The level of mRNA initiating at the &B-dependent ctc promoter was also seen to increase approximately 5-to 10-fold after heat shock.Pulse-labeling of the proteins synthesized after a shift to 48°C demonstrated that sigB wild-type and mutant strains produced the maijor heat-inducible proteins in similar amounts; however, at least seven additional proteins were present after the temperature shift in the wild-type strain but absent in the sigB null mutant.Thus, although cr' is not required for the expression of essential heat shock genes, it is activated by heat shock to elevate its own synthesis and possibly the synthesis of several other heat-inducible proteins.a3 is a minor abundance sigma factor of Bacillus subtilis that is found associated with the RNA polymerase from vegetatively growing bacteria but which disappears from the extractable RNA polymerase population by the second hour after the onset of sporulation (12). Although ae3 was the first secondary sigma factor to be discovered in bacteria, its physiological role remains obscure (6, 9, 13). Null mutations in the aW structural gene (sigB) have no obvious effect on vegetative growth or sporulation .6, 9).Even though the function of a' is not yet known, it is a potent regulatory protein with an elaborate mechanism for keeping its activity in check. sigB is the third gene in a four-gene operon with the other genes, rsbV, rsbW, and rsbX (formerly called orfV, orfW, and orfX, respectively), involved in controlling ar3 activity (3, 4, 7). Previous work suggested that the three gene products operate in a pathway of negative control, with RsbW being the primary inhibitor of ar3 activity and the other two gene products (RsbV and RsbX) functioning upstream of RsbW in the regulatory pathway (3, 7). Mutations which reduce RsbW's inhibitory effects severely impair the growth of strains which carry them and readily give rise to suppressor mutations which reduce or eliminate the activity of in these strains (2,3,7,15). In addition to the sigB operon itself (3, 17), two genes (ctc and csbA) which depend on ae for a significant part of their expression have been identified (8,14,16 genes is temperature-sensitive oligosporageny which occurred upon disruption of ctc by an integrating plasmid (pAK-6/p1949) (28). Placement of this ctc null mutation into a strain that carri...