Velocity and isopycnic gradient centrifugation were employed to fractionate post-nuclear supernatants rapidly prepared from PC12 cells in order to characterize areas of the endoplasmic reticulum involved in various aspects of intracellular Ca 2؉ homeostasis. The endoplasmic reticulum Ca 2؉ pumping activity, defined by three properties studied in parallel in the isolated fractions; thapsigargin-sensitive uptake of 45 Ca 2؉ , Ca
2؉-dependent, thapsigargin-sensitive protein phosphorylation and Western blotting of sarcoplasmic reticulum calcium ATPase (SERCA) 2b and putative SERCA3 ATPases, was concentrated primarily in a few fractions located at the top and toward the bottom of velocity and isopycnic gradients, respectively. The endoplasmic reticulum Ca 2؉ release channel, the inositol 1,4,5-trisphosphate receptor, was concentrated in the same fractions as the Ca 2؉ pumps, and additionally in a few fractions distinctly poor in SERCAs. In contrast, two lumenal markers (protein disulfide isomerase and calreticulin, the major Ca 2؉ storage protein of non-muscle endoplasmic reticulum) were enriched in the middle fractions of the velocity gradients while calnexin, a Ca 2؉ -binding membrane protein, was more widely distributed throughout the gradients. These results document a considerable degree of functional and compositional heterogeneity in the endoplasmic reticulum of neurosecretory PC12 cells. Even in the limited areas that appear specialized for rapid Ca 2؉ uptake and release the ratio between pumps and channels varies considerably. Within the rest of the system, insulated from short-term fluctuations of Ca 2؉ concentration, Ca 2؉