Insulin resistance provide important role in pathogenesis of non-alcoholic fatty liver disease (NAFLD). Several studies already evaluate vitamin D supplementation for NAFLD patients, in relation to insulin resistance. The results obtained still carry conflicting results. This study aimed to evaluate the effect of additional treatment of vitamin D for improvement of insulin resistance in NAFLD patients. Relevant literatures were obtained from PubMed, Google Scholar, COCHRANE, and Science Direct database. The obtained studies were analyzed using fixed effect model or random effect model. Seven eligible studies with a total of 735 participants were included. Vitamin D supplementation improve insulin resistance in NAFLD patients, marked by reduce of Homeostatic Model Assessment for Insulin Resistance (HOMA-IR), with pooled mean difference − 1.06 (p = 0.0006; 95% CI: -1.66 to -0.45). Vitamin D supplementation increase the level of vitamin D serum with pooled mean difference of 17.45 (p = 0.0002; 95% CI: 8.33 to 26.56). Vitamin D supplementation decrease ALT levels, with pooled mean difference of -4.44 (p = 0.02; 95% CI: -8.24 to -0.65). No effect observed for AST levels. Vitamin D supplementation provide beneficial effects on improvement of insulin resistance in NAFLD patients. This supplementation may reduce HOMA-IR in such patients. It may serve as potential adjunctive treatment for NAFLD patients.