Antibodies to the synthetic peptide (carriercoupled) corresponding to amino acids 210-223 of the primary sequence of eel Na channel (Cl+ peptide) were generated. The antipeptide antibodies were used to identify functional roles as well as the accessibility from the external membrane surface of the C1 domains. Rabbit antipeptide antibodies bound specifically to the Cl' synthetic peptide and to an eel membrane fraction bearing a high density of Na channels. When applied to the external surface of cultured dorsal root ganglion cells obtained from newborn rats, the antibodies modify Na channel inactivation by shifting the steady-state Na current-inactivation parameter, h., curve to more negative potentials in fast and slow Na currents. The rate of inactivation of the slow channel is shown to be increased. The antibodies do not have a significant effect on activation of the channels. Part of the amino acid sequence corresponding to Cl+ peptide is therefore accessible, in the mammalian Na channel, from the external membrane surface and is associated with the inactivation gate. Na channels are transmembrane protein macromolecules essential for the generation of action potentials in excitable tissues (1, 2). In species studied thus far, the channel molecules consist of a large single polypeptide (a subunit) of relative Mr = 260,000 (3-6). Those purified from mammalian brain (4) and rabbit skeletal muscle (6) contain the a subunit accompanied by two smaller polypeptides (f3 subunits) of Mr = 33,000-43,000. The primary structures of the Electrophorus Na channel and of two distinct Na channel a polypeptides from rat brain (rat Na channels I and II) have been elucidated by cloning and sequencing of the DNAs complementary to the mRNA (7,8). Functional tests of rat a subunit expressed in Xenopus oocytes have shown the presence of most of the structural features required for channel voltage sensitivity and ion selectivity (9-11).All three a subunits of the Na channel molecules that have been already cloned contain four homologous internal repeats. The four repeats are highly conserved among all Na channels, and it was postulated that these repeats form the channel (7,8,12). The remaining regions, much of which may be exposed to either the cytoplasm or the extracellular medium, are less well conserved. Each of the four internal repeats has hydrophobic segments (in one model, three or four; in others, five) and one positively charged amphiphilic segment (S4). The S4 segments ofthe four internal repeats contain four to six positively charged amino acids (arginine or lysine) residues located at every third position with neutral, mostly hydrophobic, residues intervening between the basic residues. The homology of this region is almost complete in the three Na channels for which the sequences are known (7,8).There have been a number of attempts to model the tertiary structure of the Na channel, beginning with the primary amino acid sequence (12-15). Although these models differ substantially, all agree that the S4 segment pl...