1995
DOI: 10.1021/j100015a011
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Effects of Hydration on Scale Factors for ab Initio Force Constants. 9. Methanol

Abstract: Experimentally measured vibrational frequencies from the polar groups of peptides in aqueous solutions do not agree with frequencies calculated from scaled quantum mechanical force fields (SQMFF) using differential scale factors developed for molecules in the vapor phase. Measured stretching frequencies for carbonyl groups are more than 50 wavenumbers lower than the calculated values. On the other hand, frequencies for nonpolar groups calculated using these scale factors are relatively accurate. Our goal is to… Show more

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Cited by 23 publications
(23 citation statements)
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“…To theoretically simulate the hydration effects, three procedures have been reported: 41 (1) empirical scaling of the quantum mechanical force constants of the isolated molecule, 42 (2) use of the continuum model 43 or (3) the discrete model (DM) by including a sufficient number of explicit water molecules. 44 Tomasi's polarized continuum model (PCM) 45 was used, as it is implemented in Gaussian 03 by default (using the integral equation formalism model, IEF-PCM). 46 With this model, the number of conformers corresponding to real minima is remarkably reduced, compared to those found in the isolated state.…”
Section: Hydration Methodsmentioning
confidence: 99%
“…To theoretically simulate the hydration effects, three procedures have been reported: 41 (1) empirical scaling of the quantum mechanical force constants of the isolated molecule, 42 (2) use of the continuum model 43 or (3) the discrete model (DM) by including a sufficient number of explicit water molecules. 44 Tomasi's polarized continuum model (PCM) 45 was used, as it is implemented in Gaussian 03 by default (using the integral equation formalism model, IEF-PCM). 46 With this model, the number of conformers corresponding to real minima is remarkably reduced, compared to those found in the isolated state.…”
Section: Hydration Methodsmentioning
confidence: 99%
“…This concept is especially convenient for negative azeotropes where clustering between unlike molecules is expected to lead to liquid structures that are thermodynamically more stable. Experimentally, this concept has been probed with techniques such as infrared spectroscopy (IR), , mass spectroscopy (MS), Raman spectroscopy, nuclear magnetic resonance spectroscopy (NMR), , X-ray diffraction, inelastic neutron spectroscopy, and Fourier-transform infrared spectroscopy (FT-IR). , In this view, the liquid structure at the azeotrope is conceived to be composed of unit coclusters, each of which has a well-defined stoichiometric ratio between the two types of molecules in the mixture. For example, Jalilian used FT-IR and 1 H NMR to study the acetone/chloroform azeotropic mixture and compared it with pure acetone and pure chloroform .…”
Section: Introductionmentioning
confidence: 99%
“…17) and analyze their individual contributions (where H, S, U, and V are symbols for enthalpy, entropy, internal energy, and volume, respectively, all on a per mole basis). Direct calculation of entropy from molecular simulation is a daunting task.…”
mentioning
confidence: 99%
“…12 Reviewers have interpreted this problem, sometimes manifested by negative frequencies in some internal coordinates related to hydrogen bonds when we perform normal mode calculations, as a sign that we have not reached a stationary point or minimum in our optimizations. Our optimizations do reach stationary points.…”
Section: Introductionmentioning
confidence: 99%