This research aims to evaluate the effect of feeding different levels of whole linseed (L); as a lipid source rich in linolenic fatty acid, and full fat soybean (S); as a lipid source rich in linoleic fatty acid; on ruminal and plasma fatty acids profiles, rumen fermentation, and microorganism population. Twenty-four Damascus goats were assigned to 3 dietary treatments; S, S+L and L groups; contained 90% basal diet which consisted of 56.67% Concentrate feed mixture (CFM) and 33.33% Alfalfa hay with either 10% full fat soybean, 5% full fat soybean + 5% whole linseed or 10% whole linseed, respectively. Inclusion of linseed to diets increased (P<0.01) the total volatile fatty acids (TVFA's) and ammonia-nitrogen (NH3-N) (P<0.05) compared to animals fed on soybean diet whereas ruminal pH was not affected by dietary treatments. Significant increases (P<0.01) were detected in the populations of Cellulomonas cellulasea, Bacillus sp., Thermonospora fusca, Acetobacter xylinum, Ruminococcus albus and Clostridium cellulovorans in goats fed on linseed compared to those fed on soybean diets. The populations of R. albus and C. cellulovorans were only affected with the high inclusion of linseed. The number of ciliated sp. (Holotrichs) decreased (P< 0.01) while Entodinomorphs sp. increased (P<0.05) with linseed . There was a significant increase (P<0.05) in the total number of protozoa compared to that of goats which received soybean only. The ruminal and blood plasma fatty acids (FA) profiles of the experimental animals showed considerable modifications. Ruminal stearic acid showed the highest (P<0.01) percentage with linseed feeding while palmitic (P<0.01) and oleic acids (P<0.05) were predominant with soybean feeding. Saturated fatty acids (SFA) detected higher percentage than unsaturated ones on both levels of linseeds. Soybean inclusion increased (P<0.01) percentage of polyunsaturated fatty acids (PUFA) compared to other two groups. In blood plasma; the predominant FA were palmitic, oleic then stearic acids with soybean, either supplied alone or with linseed (S and S+L groups), whereas oleic, palmitic then linoleic acids were predominant with linseed (P<0.01). The percentage of the absorbed UFA with linseed supply was more than SFA in the same group. Plasma total protein, albumin (P<0.01) and urea (P<0.05) were increased by linseed inclusion while createnine (P<0.05) increased with soybean. Linseed inclusion resulted in decreased blood cholesterol (P<0.01), triglycerides (P<0.05), low density lipoprotein (P<0.01) and increased high density lipoprotein (P<0.01) and total antioxidant capacity (P<0.01). Results indicated that linseed inclusion in diets resulted in considerable variations in rumen and plasma FA which indicates health promoting effects. Therefore, fatty acids composition of animal's products resulted in more satisfying and healthful properties for consumer