Although cell phones and electronic devices are now integral parts of modern life (especially for young people), the radiofrequency electromagnetic field (RF-EMF) emitted by these devices is a potential health hazard. The effects of RF-EMFs have been assessed in various fields, including epidemiology and neurology. However, there are few published data on the possible effects of RF-EMFs on immune cells; this is surprising, given the importance of the immune system’s role in defending the body against infections and cancer. To assess whether chronic RF-EMF exposure has harmful effects on the immune system in juvenile rats, rats were exposed or not to 900MHz RF-EMF 23h/day during 5 weeks. Hematological, cytometric and bacteriological assays were used to probe differences between exposed and non-exposed tissues. Exposure of rats to 900 MHz RF-EMF was associated with differences in the innate immune system and even more marked in the adaptive immune system. An analysis of the intestinal microbiota revealed dysbiosis, with an over-representation of Enterococcus, Clostridium and Bacteroides spp. Enterococcus was found to have translocated into the spleen in 67% exposed rats. Exposure to a 900 MHz RF-EMF appeared to alter the immune system (and particularly the adaptive immune system) directly or via intestinal dysbiosis.