We have previously shown that the Pseudomonas aeruginosa toxA regulatory protein PtxS autoregulates its own synthesis by binding to a 52-bp fragment. The 3 end of the 52-bp fragment is located 58 bp 5 of the ptxS translation start site. We have identified a 14-bp palindromic sequence (TGAAACCGGTTTCA) within the 52-bp fragment. In this study, we used site-directed mutagenesis and promoter fusion experiments to determine if PtxS binds specifically to this palindromic sequence and regulates ptxS expression. We have also tried to determine the roles of specific nucleotides within the palindromic sequence in PtxS binding and ptxS expression. Initial promoter fusion experiments confirmed that the 52-bp fragment does not overlap with the region that carries the ptxS promoter activity. PtxS binding was eliminated upon the deletion of the 14-bp palindromic sequence from the 52-bp fragment. In addition, the deletion of the 14-bp sequence caused a significant enhancement in ptxS expression in the P. aeruginosa strain PAO1 and the ptxS isogenic mutant PAO::ptxS. Mutation of specific nucleotides within the 14-bp sequence eliminated, reduced, or had no effect on PtxS binding. However, mutations of several of these nucleotides produced a significant increase in ptxS expression in both PAO1 and PAO::ptxS. These results suggest that (i) the 14-bp palindromic sequence and specific nucleotides within it play a role in PtxS binding and (ii) deletion of the palindromic sequence or changing of certain nucleotides within it interferes with another mechanism that may regulate ptxS expression.Pseudomonas aeruginosa is a gram-negative opportunistic pathogen that causes serious infections in burned patients and immunocompromised hosts (4,22). Damage caused by P. aeruginosa is due to the production of several extracellular and cell-associated virulence factors (7, 23). Exotoxin A, which is the most toxic of the extracellular virulence factors, catalyzes the transfer of an ADP-ribosyl moiety onto elongation factor 2 in eukaryotic cells (6). This results in inhibition of protein synthesis and cell death (6, 21). It is known that exotoxin A production by P. aeruginosa is controlled by both positive and negative regulatory genes (17). We have previously described two P. aeruginosa genes, ptxR and ptxS, that regulate exotoxin A synthesis (3, 5). The ptxR gene codes for a protein that belongs to the LysR family of transcriptional activators and enhances exotoxin A synthesis at the transcriptional level (5). The ptxS gene codes for a protein that belongs to the GalRLacI family of transcriptional repressors (3). Available evidence suggests that PtxS interferes with the enhancement of exotoxin A synthesis by ptxR (3).Despite previous analyses, the mechanism(s) through which the expression of ptxS and ptxR is regulated is not known. We have recently provided evidence which suggests that ptxS negatively autoregulates its own synthesis in P. aeruginosa (15). The level of -galactosidase activity produced by a ptxS-lacZ fusion plasmid in the ptxS isoge...