In this work, a numerical study is performed to know the effect of mode stirrers on the temperature distribution inside a microwave cavity with a conveyor belt system. A 3-dimensional simulation model is built and simulated using the COMSOL Multiphysics software. Since it is very difficult to simulate the mode stirrer's motion using COMSOL, eleven still angles of the mode stirrers are considered. The final temperature distribution result is obtained by taking the average of all eleven angles results. Also to get the final temperature of a heated material after it comes out of the cavity, the average of all temperature values in the direction of conveyor belt motion is taken as it is assumed that conveyor belt motion is much slower than the speed of the mode stirrers. The simulation results show that temperature distribution is more uniform for the case with mode stirrers compared to that obtained without mode stirrers. This is confirmed by using standard deviation equation.