“… PUTATIVE BIOMARKERS | TECHNIQUE OF BIOMARKER INVESTIGATION | VALIDATION ON CELL LINES OR CLINICAL SAMPLES | MAJOR MECHANISMS OF BM REGULATION | REFERENCES |
ND | NGS mutational analysis of 50 commonly mutated cancer-related genes | 389 BC patients | ND | [54] |
MAF | Oligonucleotide Array Assays and FISH | Bone-homing human BC cell lines 334 primary BC | Control of tumour cell/bone stroma interaction; regulation of cell adhesion, migration and osteoclast differentiation; regulation of PTH-rP expression. | [55] |
FISH | 1739 BC patients enrolled in AZURE clinical trial | [56] |
102-gene signature, including CXCR4, FGF5, CTGF, IL11, MMP1, FST, ADAMTS1, PRG1 (fold change > 4) | Microarray analysis | MDA-MB-231 human BC cell subclones divided in weakly and highly metastatic to bone | Modulation of tumour cell invasion, angiogenesis, bone-homing, osteoclastogenesis and osteoclast activation | [57] |
31-gene signature | Microarray analysis | Human B02 BC cells derived from BM caused by MDA-MB-231 cells | Osteoblast differentiation | [58] |
APOPEC3B, ATL2, C6orf61, C6orf167, KCNS1, MFAP3L, NIP7, NUP155, PALM2, PGD5, SFT2D2, STEAP, NAT1, BBS1, PH-4. | Microarray analysis | 157 metastatic BC patients + a dataset of 376 BC used as validation cohort | EMT, invasion/migration, bone-homing | [47] |
IL-1B | RT-PCR IHC | Bone-homing sub-clone of MDA-MB-231 cells; 150 primary BC | Bone homing | [59] |
RT-PCR | MDA-MB-231 human BC cell line; 1300 patients included in AZURE clinical trial | promotion of EMT, invasion, migration, and bone homing | [60] |
IL-6 gene signature | Microarray analysis RT-PCR | Co-culture of MDA-MB231 BC cell line with osteoblast; 295 early stage BC from Netherlands Cancer Institute | osteoclast activation, BC stem cell biology | [62] |
ZNF217 gene signature | RT-PCR | 113 wome... |
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