“…Longum , Bifidobacterium pseudolongum , Clostridium perfringens , Peptostreptococcus asaccharolyticus , Clostridium sporogenes , Lactobacillus paracasei , Lactobacillus reuteri , Lactobacillus murinus , Bifidobacterium spp [61, 62, 64–66] | Indolepropionic acid (IPA) | Clostridium sporogenes , Clostridium botulinum , Clostridium caloritolerans , Peptostreptococcus russellii , Peptostreptococcus anaerobius , Peptostreptococcus stomatis | [58, 63] |
Skatole | Clostridium drakei , Clostridium scatologenes , Lactobacillus spp. | [67, 68] |
Indolealdehyde (IAld) | Lactobacillus reuteri , Lactobacillus murinus | [65] |
Tryptamine | Clostridium sporogenes , Ruminococcus gnavus | [69] |
Bile acids | Secondary bile acids | Clostridium scindens , Ruminococcus gnavus , Bacteroides fragilis , Bacteroides vulgatus , Clostridium perfringens , Peptostreptococcus productus , Pseudomonas testosteroni , Lactobacillus plantarum , Bifidobacterium , Clostridium hiranonis , Eubacterium | [70–77] |
Oxo- (or keto) bile acids | Eubacterium lentum , Clostridium perfringens , Ruminococcus. ganvus | [78–80] |
Arginine | Polyamines | Bacteroides fragilis , Shigella flexneri , Streptococcus pneumoniae | [81–83] |
Histidine | Histamine | Lactobacillus rhamnosus | [84] |
…”