Editorial: Repetitive Structures in Biological Sequences: Algorithms and Applications

Pellegrini, Marco; Magi, Alberto; Iliopoulos, Costas S.

doi:10.3389/fbioe.2016.00066

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2024

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“…Additionally, there is a growing need for the development of standardized benchmark datasets and evaluation metrics to facilitate the comparison of different algorithms and ensure reproducibility in research findings. These challenges and future directions are crucial for advancing DNA sequence pattern matching research and its applications in genomics and personalized medicine [3]. The historical overview of DNA sequence pattern matching reveals a significant evolution in the field of bioinformatics.…”

Section: Introductionmentioning

confidence: 99%

Pattern Matching Of DNA Sequence Using FRCT Algorithm

M.C,

C J

2024

eatp

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DNA sequences are differing with respect to their size in billions of nucleotides range. Pattern matching is significant for information processing in computer field in identifying the functional and structural behaviour of genes. In this proposed study, the pattern matching of sequences have been performed for the large set of DNA sequences. The pattern matching is effectively performed by using the Fast Reliable Cartesian Tree Algorithm (FRCT), where patterns are encoded and shifting patterns are enhanced which reduces the computational time and assures high reliability. The proposed algorithm shows better pattern matching in terms of execution time compared with various existing strategies performed on suitable large DNA sequences dataset.

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Section: Introductionmentioning

confidence: 99%