Abstract:West Africa experienced the first epidemic of Ebola virus infection, with by far the greatest number of cases in Guinea, Sierra Leone, and Liberia. The unprecedented epidemic triggered an unparalleled response, including the deployment of multiple Ebola treatment units and mobile/field diagnostic laboratories. The National Institute of Allergy and Infectious Diseases and the Centers for Disease Control and Prevention deployed a joint laboratory to Monrovia, Liberia, in August 2014 to support the newly founded … Show more
“…This unique model describes a mobile laboratory structure co-located at an ETU which differed from other laboratories deployed during the response in a number of ways [ 9 , 19 – 21 , 39 ]. The laboratory was equipped with a rapid molecular diagnostic test, Xpert Ebola, allowing single specimen testing, staffed by local laboratory technicians as opposed to international teams on short deployments, supported by MoH and a collaboration of international partners, and provided EVD testing for both surveillance and ETU admissions towards the end of the outbreak when sustained diagnostic to detect new clusters was essential.…”
Section: Discussionmentioning
confidence: 99%
“…The assay has been shown to have a highly accurate performance and is comparable to other commercial assays for EVD [ 26 , 27 , 46 ]. Running on an automated cartridge-based platform means the assay has many benefits over conventional PCR platforms including reduced technical expertise and training requirements, minimal biosafety constraints outside of the glovebox, less sample processing and a faster turn-around time to results [ 5 , 26 , 27 , 39 ]. In Liberia, the assay resulted in shorter testing time than other EVD testing methodologies including the DOD EZ1 RT-PCR assay and US CDC’s Ebola virus NP/VP40 RT-PCR assays which were used in the other three Liberian EVD testing laboratories and averaged at 5–6 hours/run.…”
Section: Discussionmentioning
confidence: 99%
“…The model described here, differs from many mobile laboratories deployed during the outbreak as it was staffed by local laboratory technicians as opposed to international experts on short missions, providing more sustainable diagnostic capacity, vital as international partner support declined towards the end of the outbreak [ 5 , 9 , 19 , 39 , 47 ]. Staff feedback further supports the success of the laboratory and the impact of the initiative on laboratory systems strengthening.…”
The 2014–16 Ebola Virus Disease (EVD) outbreak in West Africa highlighted the necessity for readily available, accurate and rapid diagnostics. The magnitude of the outbreak and the re-emergence of clusters of EVD cases following the declaration of interrupted transmission in Liberia, reinforced the need for sustained diagnostics to support surveillance and emergency preparedness. We describe implementation of the Xpert Ebola Assay, a rapid molecular diagnostic test run on the GeneXpert platform, at a mobile laboratory in Liberia and the subsequent impact on EVD outbreak response, case management and laboratory system strengthening. During the period of operation, site coordination, management and operational capacity was supported through a successful collaboration between Ministry of Health (MoH), World Health Organization (WHO) and international partners. A team of Liberian laboratory technicians were trained to conduct EVD diagnostics and the laboratory had capacity to test 64–100 blood specimens per day. Establishment of the laboratory significantly increased the daily testing capacity for EVD in Liberia, from 180 to 250 specimens at a time when the effectiveness of the surveillance system was threatened by insufficient diagnostic capacity. During the 18 months of operation, the laboratory tested a total of 9,063 blood specimens, including 21 EVD positives from six confirmed cases during two outbreaks. Following clearance of the significant backlog of untested EVD specimens in November 2015, a new cluster of EVD cases was detected at the laboratory. Collaboration between surveillance and laboratory coordination teams during this and a later outbreak in March 2016, facilitated timely and targeted response interventions. Specimens taken from cases during both outbreaks were analysed at the laboratory with results informing clinical management of patients and discharge decisions. The GeneXpert platform is easy to use, has relatively low running costs and can be integrated into other national diagnostic algorithms. The technology has on average a 2-hour sample-to-result time and allows for single specimen testing to overcome potential delays of batching. This model of a mobile laboratory equipped with Xpert Ebola test, staffed by local laboratory technicians, could serve to strengthen outbreak preparedness and response for future outbreaks of EVD in Liberia and the region.
“…This unique model describes a mobile laboratory structure co-located at an ETU which differed from other laboratories deployed during the response in a number of ways [ 9 , 19 – 21 , 39 ]. The laboratory was equipped with a rapid molecular diagnostic test, Xpert Ebola, allowing single specimen testing, staffed by local laboratory technicians as opposed to international teams on short deployments, supported by MoH and a collaboration of international partners, and provided EVD testing for both surveillance and ETU admissions towards the end of the outbreak when sustained diagnostic to detect new clusters was essential.…”
Section: Discussionmentioning
confidence: 99%
“…The assay has been shown to have a highly accurate performance and is comparable to other commercial assays for EVD [ 26 , 27 , 46 ]. Running on an automated cartridge-based platform means the assay has many benefits over conventional PCR platforms including reduced technical expertise and training requirements, minimal biosafety constraints outside of the glovebox, less sample processing and a faster turn-around time to results [ 5 , 26 , 27 , 39 ]. In Liberia, the assay resulted in shorter testing time than other EVD testing methodologies including the DOD EZ1 RT-PCR assay and US CDC’s Ebola virus NP/VP40 RT-PCR assays which were used in the other three Liberian EVD testing laboratories and averaged at 5–6 hours/run.…”
Section: Discussionmentioning
confidence: 99%
“…The model described here, differs from many mobile laboratories deployed during the outbreak as it was staffed by local laboratory technicians as opposed to international experts on short missions, providing more sustainable diagnostic capacity, vital as international partner support declined towards the end of the outbreak [ 5 , 9 , 19 , 39 , 47 ]. Staff feedback further supports the success of the laboratory and the impact of the initiative on laboratory systems strengthening.…”
The 2014–16 Ebola Virus Disease (EVD) outbreak in West Africa highlighted the necessity for readily available, accurate and rapid diagnostics. The magnitude of the outbreak and the re-emergence of clusters of EVD cases following the declaration of interrupted transmission in Liberia, reinforced the need for sustained diagnostics to support surveillance and emergency preparedness. We describe implementation of the Xpert Ebola Assay, a rapid molecular diagnostic test run on the GeneXpert platform, at a mobile laboratory in Liberia and the subsequent impact on EVD outbreak response, case management and laboratory system strengthening. During the period of operation, site coordination, management and operational capacity was supported through a successful collaboration between Ministry of Health (MoH), World Health Organization (WHO) and international partners. A team of Liberian laboratory technicians were trained to conduct EVD diagnostics and the laboratory had capacity to test 64–100 blood specimens per day. Establishment of the laboratory significantly increased the daily testing capacity for EVD in Liberia, from 180 to 250 specimens at a time when the effectiveness of the surveillance system was threatened by insufficient diagnostic capacity. During the 18 months of operation, the laboratory tested a total of 9,063 blood specimens, including 21 EVD positives from six confirmed cases during two outbreaks. Following clearance of the significant backlog of untested EVD specimens in November 2015, a new cluster of EVD cases was detected at the laboratory. Collaboration between surveillance and laboratory coordination teams during this and a later outbreak in March 2016, facilitated timely and targeted response interventions. Specimens taken from cases during both outbreaks were analysed at the laboratory with results informing clinical management of patients and discharge decisions. The GeneXpert platform is easy to use, has relatively low running costs and can be integrated into other national diagnostic algorithms. The technology has on average a 2-hour sample-to-result time and allows for single specimen testing to overcome potential delays of batching. This model of a mobile laboratory equipped with Xpert Ebola test, staffed by local laboratory technicians, could serve to strengthen outbreak preparedness and response for future outbreaks of EVD in Liberia and the region.
“…For DGHP Africa regional Ebola outbreak response activity in 2014, a joint CDC Kenya DLSP staff and US National Institutes of Health team was deployed to Liberia, where the first mobile laboratory during the Ebola outbreak was established that assisted in the real time reverse transcription polymerase chain reaction (rRT-PCR) confirmation of Ebola virus from suspected and probable cases of Ebola virus disease for clinical management. The mobile Ebola laboratory tested6 000 specimens in support of the Ebola response [28]. DLSP has also identified and responded to other outbreaks including a rickettsial outbreak in Rwanda, [29].…”
Since 1979, multiple CDC Kenya programs have supported the development of diagnostic expertise and laboratory capacity in Kenya. In 2004, CDC’s Global Disease Detection (GDD) program within the Division of Global Health Protection in Kenya (DGHP-Kenya) initiated close collaboration with Kenya Medical Research Institute (KEMRI) and developed a laboratory partnership called the Diagnostic and Laboratory Systems Program (DLSP). DLSP built onto previous efforts by malaria, human immunodeficiency virus (HIV) and tuberculosis (TB) programs and supported the expansion of the diagnostic expertise and capacity in KEMRI and the Ministry of Health. First, DLSP developed laboratory capacity for surveillance of diarrheal, respiratory, zoonotic and febrile illnesses to understand the etiology burden of these common illnesses and support evidenced-based decisions on vaccine introductions and recommendations in Kenya. Second, we have evaluated and implemented new diagnostic technologies such as TaqMan Array Cards (TAC) to detect emerging or reemerging pathogens and have recently added a next generation sequencer (NGS). Third, DLSP provided rapid laboratory diagnostic support for outbreak investigation to Kenya and regional countries. Fourth, DLSP has been assisting the Kenya National Public Health laboratory-National Influenza Center and microbiology reference laboratory to obtain World Health Organization (WHO) certification and ISO15189 accreditation respectively. Fifth, we have supported biosafety and biosecurity curriculum development to help Kenyan laboratories safely and appropriately manage infectious pathogens. These achievements, highlight how in collaboration with existing CDC programs working on HIV, tuberculosis and malaria, the Global Health Security Agenda can have significantly improve public health in Kenya and the region. Moreover, Kenya provides an example as to how laboratory science can help countries detect and control of infectious disease outbreaks and other public health threats more rapidly, thus enhancing global health security.
“…This meeting did not assemble all organisations actively deploying mobile laboratories in the EVD outbreak in West Africa nor did all organisations choose to publish their experiences in this special issue. Additional publications on mobile laboratory deployments have been published in other journals [31][32][33][34][35][36][37][38][39].…”
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