Water security has gained increasing attention of the whole society since the late 1990s in China, and in recent years its strategic significance for the country has been addressed by the central government more frequently. Indicators characterizing the major components of water security, such as socioeconomic conditions, water resources, water environment, and aquatic ecosystems, have been used to develop metrics and measure China's water security status and its progress at different scales of the country, provinces, cities, and river basins since the early 2000s. Aiming at providing sound decision-making, however, there are still critical methodological challenges to this decade-long practice, for example, selection, banding and aggregation of indicators, and consideration of stakeholder participation.