Rotavirus is the single most important etiologic agent of acute diarrhea mainly affecting children under the age of 5 (32). Each year human rotavirus (HRV) causes approximately 2 million hospitalizations and approximately 440,000 deaths, with the majority of the mortality in children from less industrialized countries (32).It is estimated that all children will be infected at least once by the age of 5 years (5), which leads to protective immunity later in life. In adults rotavirus infections are usually asymptomatic, but there are reports of disease in elderly and immunocompromised patients (1,4,26,28,33).Reports from different countries suggest an epidemiological shift of HRV strains over the years (20,30). It seems that one specific variant or lineage within the serotypes might be responsible for outbreaks in well-defined geographic regions; for instance, the lineage Ic of the strain G4P[8] increased in prevalence in some cities of Argentina in 1998 and 1 year later in Paraguay (7, 9). The lineage Ic of the G4P[8] strain was also found to circulate in Italy in 1999 and 2000 (3), and during the rotavirus season in 1997 the emergence of a G4P[6] strain with a different RNA profile was observed in South Africa (34). Furthermore, in Nicaragua the uncommon strain G4P[6] was observed to circulate at very low frequency in 2001 and 2002 (12). The emergence of these novel strains and new lineages is due to different evolutionary mechanisms including gene rearrangements, accumulation of point mutations, and reassortment of genome segments (18).During February and March 2005, one of the largest recorded outbreaks of severe acute gastroenteritis occurred in Nicaragua, affecting Ն64,000 individuals and causing at least 56 deaths, with children Ͻ5 years of age being most affected. We have carried out a molecular epidemiology study to investigate properties of the rotavirus strains associated with this unique and large epidemic outbreak. Our main observation was that the outbreak was associated with a mutated G4P [8] virus not previously detected in Nicaragua and most likely introduced from South America. The knowledge from this study may have implications for rotavirus prevention including vaccine introduction in Nicaragua.
MATERIALS AND METHODSGeographic distribution of collected stool samples. During February and March 2005, a total of 108 stool samples were collected through a laboratorybased survey of acute diarrhea cases, defined as three or more liquid stools over a 24-h period (12-14). The surveillance was performed in the main hospital of every city included in this study; therefore, most of the samples (55/108; 76.4%) came from moderate to severe cases. A portion of the samples (17/72; 23.6%) was collected in the laboratory of the Department of Microbiology of the National Autonomous University of Nicaragua-Leon serving mainly outpatients.The stool specimens were stored at 4°C until transported to the Department of Microbiology of the National Autonomous University of Nicaragua-Leon. A suspension of 10% (vol/vol)...