Background: Abscisic acid (ABA) is an important phytohormone responsible for activating drought resistance, but the regulation mechanism of exogenous ABA on tea plants under drought stress was rarely reported. Results: The results showed that the exogenous ABA significantly induced the metabolic pathways of tea leaves under drought stress, including the chlorophyll synthesis, photosynthesis, sucrose and starch metabolism, TCA cycle, glycolysis, lipid metabolism and flavonoids biosynthesis. In which, the exogenous ABA could up-regulated the genes related to lipid metabolism and flavonoid biosynthesis, including LPCAT , ALDH, FLS, CHI, DFR, and down-regulated the genes related to lipid metabolism and flavonoid biosynthesis, including FATB, EKI, DGK , PAL, 4CL . The exogenous ABA could also increase the contents of flavone, anthocyanins, flavonol, isoflavone of tea leaves under drought stress, including delphinidin 3-O-glucosidewere, cyanidin 3-O-rutinoside, kaempferitrin, sakuranetin, prunetin, kaempferol, and decrease the contents of glycerophospholipids, glycerolipids and fatty acids of tea leaves under drought stress, including LysoPE 14:0, LysoPE 16:0, LysoPE 18:0, LysoPE 18:1, LysoPC 15:1 and LysoPC 16:0. And there were strong correlations between the genes and metabolites. Conclusions: The results suggested that the exogenous ABA could alleviate the damages of tea leaves under drought stress through inducing the expressions of the genes and altering the contents of metabolites in response to drought stress. The data also provide a good foundation for further research on the roles of the genes and metabolites in response to ABA.