The cyanobacterium Synechocystis sp. strain PCC 6803 possesses two CO 2 uptake systems and two HCO 3 ؊ transporters. We transformed a mutant impaired in CO 2 uptake and in cmpA-D encoding a HCO 3 ؊ transporter with a transposon inactivation library, and we recovered mutants unable to take up HCO 3 ؊ and grow in low CO 2 at pH 9.0. They are all tagged within slr1512 (designated sbtA). We show that SbtA-mediated transport is induced by low CO 2 , requires Na ؉ , and plays the major role in HCO 3 ؊ uptake in Synechocystis. Inactivation of slr1509 (homologous to ntpJ encoding a Na ؉ /K ؉ -translocating protein) abolished the ability of cells to grow at [Na ؉ ] higher than 100 mM and severely depressed the activity of the SbtA-mediated HCO 3 ؊ transport. We propose that the SbtA-mediated HCO 3 ؊ transport is driven by ⌬Na ؉ across the plasma membrane, which is disrupted by inactivating ntpJ. Phylogenetic analyses indicated that two types of sbtA exist in various cyanobacterial strains, all of which possess ntpJ. The sbtA gene is the first one identified as essential to Na ؉ -dependent HCO 3 ؊ transport in photosynthetic organisms and may play a crucial role in carbon acquisition when CO 2 supply is limited, or in Prochlorococcus strains that do not possess CO 2 uptake systems or Cmp-dependent HCO 3 ؊ transport.Growth of many photosynthetic microorganisms depends on the activity of a CO 2 -concentrating mechanism (CCM), 1 which raises the [CO 2 ] in close proximity to ribulose-1,5-bisphosphate carboxylase/oxygenase and thereby enables efficient CO 2 fixation despite the low affinity of the enzyme for CO 2 (1, 2). In the cyanobacterium Synechocystis sp. strain PCC 6803 (hereafter Synechocystis 6803), the CCM involves active CO 2 uptake and HCO 3 Ϫ transport. We have recently identified two systems for CO 2 uptake in Synechocystis 6803, one constitutive and the other inducible by low CO 2 (3). As deduced from phylogenetic analysis of proteins encoded by the genes involved, these CO 2 uptake systems are present in various cyanobacteria with the exception of Prochlorococcus marinus (3). The inducible system that depends on NdhD3/ NdhF3/CupA shows higher maximal activity and higher affinity for CO 2 than the constitutive, NdhD4/NdhF4/CupB-dependent system. Inactivation of two different genes, one encoding a component of the constitutive system and the other a constituent of the inducible system, abolished CO 2 uptake activity. The double mutants were unable to grow at pH 7.0 under air level of CO 2 (3, 4). In contrast, because the mutants possessed HCO 3 Ϫ transport capability, they could grow like the wild type (WT) at pH 9.0 in air.An ABC-type HCO 3 Ϫ transporter encoded by cmpABCD has been identified in Synechococcus sp. strain PCC 7942 (thereafter Synechococcus 7942) (5). Inactivation of cmp genes in Synechocystis 6803, however, had little effect on the HCO 3 Ϫ transport activity. This indicated that another HCO 3 Ϫ transporter, as yet unidentified, plays a central role in HCO 3 Ϫ uptake. Sodium ions are essential for ...