Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis

Wingfield, Brenda D.; Duong, Tuan A.; Hammerbacher, Almuth; Nest, Magriet A. van der; Wilson, Andrea M.; Chang, Runlei; Beer, Z. Wilhelm de; Steenkamp, Emma Theodora; Wilken, P. Markus; Naidoo, Kershney; Wingfield, Michael J.

doi:10.5598/imafungus.2016.07.02.11

Cited by 38 publications

(36 citation statements)

References 49 publications

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“…2013 , Van der Nest et al . 2014a , b , Wingfield et al 2015a , b , 2016a , b ). The phylogenetic position of Berkeleyomyces basicola is presented in Fig.…”

Section: Resultsmentioning

confidence: 99%

“…In this study, we aimed to produce a draft genome assembly for C. smalleyi . This assembly would be the seventh Ceratocystis species for which a genome sequence is published, and adds to the valuable genomic resource available for members of Ceratocystidaceae ( Molano et al 2018 , Van der Nest et al 2014a , b , 2015 , Vanderpool et al 2017 , Wilken et al 2013 , 2018 , Wingfield et al 2015a , b , 2016a , b ). Furthermore, the availability of a genome assembly will afford the opportunity in future to investigate aspects of the unique biology of C. smalleyi .…”

Section: Introductionmentioning

confidence: 99%

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Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata

et al. 2018

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Draft genomes of the species Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina and Morchella septimelata are presented. Both mating types (MAT1-1 and MAT1-2) of Cercospora beticola are included. Two strains of Coleophoma cylindrospora that produce sulfated homotyrosine echinocandin variants, FR209602, FR220897 and FR220899 are presented. The sequencing of Aspergillus mulundensis, Coleophoma cylindrospora and Phialophora cf. hyalina has enabled mapping of the gene clusters encoding the chemical diversity from the echinocandin pathways, providing data that reveals the complexity of secondary metabolism in these different species. Overall these genomes provide a valuable resource for understanding the molecular processes underlying pathogenicity (in some cases), biology and toxin production of these economically important fungi.

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“…2013 , Van der Nest et al . 2014a , b , Wingfield et al 2015a , b , 2016a , b ). The phylogenetic position of Berkeleyomyces basicola is presented in Fig.…”

Section: Resultsmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata

et al. 2018

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“…Sequences obtained from the epitype have been deposited in the RefSeq Targeted Loci (RTL) database in NCBI GenBank to enable accurate and reliable identifications when BLAST searches are conducted (Schoch et al 2014). In addition, a draft genome sequence for the ex-epitype culture has already been generated and is publicly available (Wingfield et al 2016). The typifications together with the formal proposal will serve to stabilize the nomenclature of the oak wilt fungus.…”

Section: Discussionmentioning

confidence: 99%

Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota)

Beer¹,

Marincowitz²,

Duong³

et al. 2017

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Recent reclassification of the Ceratocystidaceae (Microascales) based on multi-gene phylogenetic inference has shown that the oak wilt fungus Ceratocystis fagacearum does not reside in any of the four genera in which it has previously been treated. In this study, we resolve typification problems for the fungus, confirm the synonymy of Chalara quercina (the first name applied to the fungus) and Endoconidiophora fagacearum (the name applied when the sexual state was discovered). Furthermore, the generic placement of the species was determined based on DNA sequences from authenticated isolates. The original specimens studied in both protologues and living isolates from the same host trees and geographical area were examined and shown to represent the same species. A lectotype was designated for Chalara quercina and Endoconidiophora fagacearum and an epitype linked to a living ex-epitype isolate was designated. Phylogenetic analyses confirmed that the species resides in a well-supported monophyletic lineage in the Ceratocystidaceae, distinct from all other genera in the family. The new genus Bretziella is described to accommodate the oak wilt fungus.

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“…de Beer & M.J. Wingf. (Wingfield et al ., )] were extracted from their genomes available on NCBI GenBank. This dataset was used to determine the genetic variation within isolates of T. basicola .…”

Section: Methodsmentioning

confidence: 99%

A new genus and species for the globally important, multihost root pathogen Thielaviopsis basicola

et al. 2017

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The plant pathogenic asexual fungus Thielaviopsis basicola (Ascomycota) causes black root rot on many important agricultural and ornamental plant species. Since its first description in 1850, this species has had a tumultuous taxonomic history, being classified in many different genera. Thus far, DNA‐based techniques have not played a significant role in identification of T. basicola and have been used only to confirm its placement in the Microascales. This investigation reconsidered the phylogenetic placement of T. basicola, using DNA sequence data for six different gene regions. It included 41 isolates identified as T. basicola from 13 geographical locations worldwide. Phylogenetic analyses showed that these isolates grouped in a well‐supported lineage distinct from other genera in the Ceratocystidaceae, here described as Berkeleyomyces gen. nov. The data also provided robust evidence that isolates of T. basicola include a cryptic sister species. As a result, this report provides a new combination as B. basicola comb. nov. and introduces a new species as B. rouxiae sp. nov.

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Draft genome sequences for Ceratocystis fagacearum, C. harringtonii, Grosmannia penicillata, and Huntiella bhutanensis

Cited by 38 publications

References 49 publications

Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata

Draft genome sequence of Annulohypoxylon stygium, Aspergillus mulundensis, Berkeleyomyces basicola (syn. Thielaviopsis basicola), Ceratocystis smalleyi, two Cercospora beticola strains, Coleophoma cylindrospora, Fusarium fracticaudum, Phialophora cf. hyalina, and Morchella septimelata

Bretziella, a new genus to accommodate the oak wilt fungus, Ceratocystis fagacearum (Microascales, Ascomycota)

A new genus and species for the globally important, multihost root pathogen Thielaviopsis basicola

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