Draft Genome Sequence of the Coccolithovirus Emiliania huxleyi Virus 202

Coccolithoviruses: A Review of Cross-Kingdom Genomic Thievery and Metabolic Thuggery

“…Annotated EhV genomes [1,44,45,46,47,48,49] were used to build genomic alignments. Prior to analysis, the gaps between the assembled annotated contigs of each draft genome were made the same length by adding a known length of ambiguous nucleotides (i.e., a series of 10 Ns).…”

“…Since the sequencing of the EhV-86 genome, an additional 12 EhV strains have been isolated and their genomes sequenced [43,44,45,46,47,48,49]. This makes EhVs one of the largest collections of Phycodnaviridae viruses in culture with complete or near-complete genome sequences available.…”

Genomic Sequence and Analysis of EhV-99B1, a New Coccolithovirus from the Norwegian Fjords

“…A 75-bp scar remnant of the phosphate permease gene is still present at the 3′ end of this genome region in both viruses indicating that the fjord EhVs did once possess the phosphate permease gene. However, ehv117 is encoded by, and retained in, all the 9 EhV strains isolated from the English Channel [6,7,8,9,10]. The involvement of the gene product in the active transport of phosphate could provide a crucial advantage for the production of new nucleotides during replication of the viral genome.…”

“…Due to the highly repetitive nature of the genomes, just one coccolithovirus (EhV-86) has been fully sequenced, in which 472 CDSs were identified [6], while a further eight strains (EhV-163, EhV-201, EhV-202, EhV-203, EhV-207, EhV-208, EhV-84 and EhV-88) have been partially sequenced [7,8,9,10,11]. EhV-86 was originally isolated from the English Channel in 1999, the same year as EhV-99B1, while EhV-163 was isolated from the same Norwegian fjord as EhV-99B1 a year later in 2000 [12].…”

Genome sequences published outside of Standards in Genomic Sciences, January-March 2012

“…Aspergillus flavus, sequence accession GSE32177 [79] Bacteriophage SPN3UB, sequence accession JQ288021 [80] Bamboo mitochondria, sequence accession JQ235166 to JQ235179 [81] Boea hygrometrica chloroplast, sequence accession JN107811 [82] Boea hygrometrica mitochondrial, sequence accession JN107812 [82] Canine Picornavirus, sequence accession JN831356 [83] Chandipura virus (CHPV) CIN0327, sequence accession GU212856.1 [84] Chandipura virus (CHPV) CIN0451, sequence accession GU212857.1 [84] Chandipura virus (CHPV) CIN0751, sequence accession GU212858.1 [84] Chandipura virus (CHPV) CIN0755, sequence accession GU190711.1 [84] Chinese Porcine Parvovirus Strain PPV2010, sequence accession JN872448 [85] Common midwife toad megavirus, sequence accession JQ231222 [86] Dengue Virus Serotype 4, sequence accession JN983813 [87] Duck Tembusu Virus, sequence accession JF270480 [88] Duck Tembusu Virus, sequence accession JQ314464 [88] Duck Tembusu Virus, sequence accession JQ314465 [88] Emiliania huxleyi Virus 202, sequence accession HQ634145 [89] Emiliania huxleyi Virus EhV-88, sequence accession JF974310 [89] Emiliania huxleyi EhV-201, sequence accession JF974311 [89] Emiliania huxleyi EhV-207, sequence accession JF974317 [89] Emiliania huxleyi EhV-208, sequence accession JF974318 [89] Glarea lozoyensis, sequence accession GUE00000000 [90] Nannochloropis gaditana, sequence accession AGNI00000000 [91] Oryza sativa cv., sequence accession DRA000499 [92] Partetravirus, sequence accession JN990269 [93] Porcine Bocavirus PBoV5, sequence accession JN831651 [94] Porcine epidemic diarrhea virus, sequence accession JQ282909 [95] Pseudomonas aeruginosa lytic bacteriophage PA1Ø, sequence accession HM624080 [96] Pseudomonas fluorescens phage OBP, sequence accesssion JN627160 [97] RNA Virus from Avocado, sequence accession JN880414 [98] Salmonella enterica Serovar Typhimuriu...…”