Draft Genome Sequence of Bhargavaea cecembensis Strain DSE10
            <sup>T</sup>
            , Isolated from a Deep-Sea Sediment Sample Collected at a Depth of 5,904 m from the Chagos-Laccadive Ridge System in the Indian Ocean

Shivaji, Sisinthy; Ara, Sreenivas; Begum, Zareena; Manorama, R.; Singh, Aditya; Pinnaka, Anil Kumar

doi:10.1128/genomea.00346-13

Cited by 2 publications

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References 4 publications

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“…Both strains were isolated from dairy-processing plants in New Zealand and The Netherlands, respectively. Other draft genomes available in the NCBI database are A. flavithermus AK1 (PRJNA197764) and A. flavithermus Kn10 (PRJNA201846), the latter having been announced recently [8] . The draft genome of another species, Anoxybacillus kamchatkensis G10 (PRJNA199541), isolated from an Indonesian hot spring, was announced in 2012 [9] .…”

Section: Introductionmentioning

confidence: 99%

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

et al. 2014

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Species of Anoxybacillus are widespread in geothermal springs, manure, and milk-processing plants. The genus is composed of 22 species and two subspecies, but the relationship between its lifestyle and genome is little understood. In this study, two high-quality draft genomes were generated from Anoxybacillus spp. SK3-4 and DT3-1, isolated from Malaysian hot springs. De novo assembly and annotation were performed, followed by comparative genome analysis with the complete genome of Anoxybacillus flavithermus WK1 and two additional draft genomes, of A. flavithermus TNO-09.006 and A. kamchatkensis G10. The genomes of Anoxybacillus spp. are among the smaller of the family Bacillaceae. Despite having smaller genomes, their essential genes related to lifestyle adaptations at elevated temperature, extreme pH, and protection against ultraviolet are complete. Due to the presence of various competence proteins, Anoxybacillus spp. SK3-4 and DT3-1 are able to take up foreign DNA fragments, and some of these transferred genes are important for the survival of the cells. The analysis of intact putative prophage genomes shows that they are highly diversified. Based on the genome analysis using SEED, many of the annotated sequences are involved in carbohydrate metabolism. The presence of glycosyl hydrolases among the Anoxybacillus spp. was compared, and the potential applications of these unexplored enzymes are suggested here. This is the first study that compares Anoxybacillus genomes from the aspect of lifestyle adaptations, the capacity for horizontal gene transfer, and carbohydrate metabolism.

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Section: Introductionmentioning

confidence: 99%

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

et al. 2014

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Isolation and Characterization of a Novel Laccase-Producing Bacteria Bhargavaea beijingensis from Paper and Pulp Effluent-Treated Soil Using In Silico Approaches

et al. 2023

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Draft Genome Sequence of Bhargavaea cecembensis Strain DSE10 ^T , Isolated from a Deep-Sea Sediment Sample Collected at a Depth of 5,904 m from the Chagos-Laccadive Ridge System in the Indian Ocean

Abstract: Here, we report the 3.2-Mbp draft genome sequence of Bhargavaea cecembensis strain DSE10T, isolated from a sediment sample collected from the Chagos-Laccadive ridge system in the Indian Ocean at a depth of 5,904 m.

Cited by 2 publications

References 4 publications

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

Isolation and Characterization of a Novel Laccase-Producing Bacteria Bhargavaea beijingensis from Paper and Pulp Effluent-Treated Soil Using In Silico Approaches

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Draft Genome Sequence of Bhargavaea cecembensis Strain DSE10 T , Isolated from a Deep-Sea Sediment Sample Collected at a Depth of 5,904 m from the Chagos-Laccadive Ridge System in the Indian Ocean

Abstract: Here, we report the 3.2-Mbp draft genome sequence of Bhargavaea cecembensis strain DSE10T, isolated from a sediment sample collected from the Chagos-Laccadive ridge system in the Indian Ocean at a depth of 5,904 m.

Cited by 2 publications

References 4 publications

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

Analysis of Anoxybacillus Genomes from the Aspects of Lifestyle Adaptations, Prophage Diversity, and Carbohydrate Metabolism

Isolation and Characterization of a Novel Laccase-Producing Bacteria Bhargavaea beijingensis from Paper and Pulp Effluent-Treated Soil Using In Silico Approaches

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Draft Genome Sequence of Bhargavaea cecembensis Strain DSE10 ^T , Isolated from a Deep-Sea Sediment Sample Collected at a Depth of 5,904 m from the Chagos-Laccadive Ridge System in the Indian Ocean